Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6SGA

Body domain of the mt-SSU assemblosome from Trypanosoma brucei

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
Ca	0005739	cellular_component	mitochondrion
Ca	0005763	cellular_component	mitochondrial small ribosomal subunit
Cd	0005739	cellular_component	mitochondrion
Cd	0005763	cellular_component	mitochondrial small ribosomal subunit
CE	0003735	molecular_function	structural constituent of ribosome
CE	0005840	cellular_component	ribosome
CE	0006412	biological_process	translation
CF	0005739	cellular_component	mitochondrion
CF	0005763	cellular_component	mitochondrial small ribosomal subunit
CH	0003735	molecular_function	structural constituent of ribosome
CH	0005840	cellular_component	ribosome
CH	0006412	biological_process	translation
Cj	0005739	cellular_component	mitochondrion
Cj	0005763	cellular_component	mitochondrial small ribosomal subunit
CK	0003735	molecular_function	structural constituent of ribosome
CK	0005739	cellular_component	mitochondrion
CK	0005763	cellular_component	mitochondrial small ribosomal subunit
CK	0005840	cellular_component	ribosome
CK	0006412	biological_process	translation
CK	1990904	cellular_component	ribonucleoprotein complex
Cn	0005739	cellular_component	mitochondrion
Cn	0020023	cellular_component	kinetoplast
CO	0005739	cellular_component	mitochondrion
CO	0005763	cellular_component	mitochondrial small ribosomal subunit
Cp	0005739	cellular_component	mitochondrion
Cp	0005763	cellular_component	mitochondrial small ribosomal subunit
CP	0005737	cellular_component	cytoplasm
CP	0005739	cellular_component	mitochondrion
CP	0005763	cellular_component	mitochondrial small ribosomal subunit
CQ	0003735	molecular_function	structural constituent of ribosome
CQ	0005840	cellular_component	ribosome
CQ	0006412	biological_process	translation
DO	0005739	cellular_component	mitochondrion
DO	0005763	cellular_component	mitochondrial small ribosomal subunit
DO	0009372	biological_process	quorum sensing
DO	0044145	biological_process	modulation of formation of structure involved in a symbiotic process
DZ	0005739	cellular_component	mitochondrion
DZ	0005763	cellular_component	mitochondrial small ribosomal subunit
F1	0003735	molecular_function	structural constituent of ribosome
F1	0005739	cellular_component	mitochondrion
F1	0005763	cellular_component	mitochondrial small ribosomal subunit
F1	0006412	biological_process	translation
F1	0008168	molecular_function	methyltransferase activity
F1	0046872	molecular_function	metal ion binding
F3	0005739	cellular_component	mitochondrion
F6	0005739	cellular_component	mitochondrion
F7	0003729	molecular_function	mRNA binding
F7	0005739	cellular_component	mitochondrion
F7	0005763	cellular_component	mitochondrial small ribosomal subunit
Fa	0005739	cellular_component	mitochondrion
FA	0005739	cellular_component	mitochondrion
FA	0020023	cellular_component	kinetoplast
Fb	0005739	cellular_component	mitochondrion
FB	0001522	biological_process	pseudouridine synthesis
FB	0003723	molecular_function	RNA binding
FB	0009451	biological_process	RNA modification
FB	0009982	molecular_function	pseudouridine synthase activity
Fc	0000035	molecular_function	acyl binding
Fc	0000036	molecular_function	acyl carrier activity
Fc	0005739	cellular_component	mitochondrion
Fc	0005747	cellular_component	obsolete mitochondrial respiratory chain complex I
Fc	0005759	cellular_component	mitochondrial matrix
Fc	0006633	biological_process	fatty acid biosynthetic process
FC	0001522	biological_process	pseudouridine synthesis
FC	0003723	molecular_function	RNA binding
FC	0009451	biological_process	RNA modification
FC	0009982	molecular_function	pseudouridine synthase activity
Fd	0005739	cellular_component	mitochondrion
Fd	0020023	cellular_component	kinetoplast
FF	0005739	cellular_component	mitochondrion
FF	0008168	molecular_function	methyltransferase activity
FF	0032259	biological_process	methylation
FF	0070475	biological_process	rRNA base methylation
FF	0071424	molecular_function	rRNA (cytosine-N4-)-methyltransferase activity
FM	0050661	molecular_function	NADP binding
FM	0051287	molecular_function	NAD binding
FN	0050661	molecular_function	NADP binding
FN	0051287	molecular_function	NAD binding
FO	0005737	cellular_component	cytoplasm
FO	0005739	cellular_component	mitochondrion
FO	0005763	cellular_component	mitochondrial small ribosomal subunit
FQ	0005249	molecular_function	voltage-gated potassium channel activity
FQ	0005737	cellular_component	cytoplasm
FQ	0005739	cellular_component	mitochondrion
FQ	0006813	biological_process	potassium ion transport
FQ	0008076	cellular_component	voltage-gated potassium channel complex
FQ	0015272	molecular_function	ATP-activated inward rectifier potassium channel activity
FQ	0016020	cellular_component	membrane
FQ	0051260	biological_process	protein homooligomerization
FQ	0071805	biological_process	potassium ion transmembrane transport
FQ	0097014	cellular_component	ciliary plasm
FQ	0098655	biological_process	monoatomic cation transmembrane transport
FR	0005249	molecular_function	voltage-gated potassium channel activity
FR	0005737	cellular_component	cytoplasm
FR	0005739	cellular_component	mitochondrion
FR	0006813	biological_process	potassium ion transport
FR	0008076	cellular_component	voltage-gated potassium channel complex
FR	0015272	molecular_function	ATP-activated inward rectifier potassium channel activity
FR	0016020	cellular_component	membrane
FR	0051260	biological_process	protein homooligomerization
FR	0071805	biological_process	potassium ion transmembrane transport
FR	0097014	cellular_component	ciliary plasm
FR	0098655	biological_process	monoatomic cation transmembrane transport
FS	0005249	molecular_function	voltage-gated potassium channel activity
FS	0005737	cellular_component	cytoplasm
FS	0005739	cellular_component	mitochondrion
FS	0006813	biological_process	potassium ion transport
FS	0008076	cellular_component	voltage-gated potassium channel complex
FS	0015272	molecular_function	ATP-activated inward rectifier potassium channel activity
FS	0016020	cellular_component	membrane
FS	0051260	biological_process	protein homooligomerization
FS	0071805	biological_process	potassium ion transmembrane transport
FS	0097014	cellular_component	ciliary plasm
FS	0098655	biological_process	monoatomic cation transmembrane transport
FT	0005249	molecular_function	voltage-gated potassium channel activity
FT	0005737	cellular_component	cytoplasm
FT	0005739	cellular_component	mitochondrion
FT	0006813	biological_process	potassium ion transport
FT	0008076	cellular_component	voltage-gated potassium channel complex
FT	0015272	molecular_function	ATP-activated inward rectifier potassium channel activity
FT	0016020	cellular_component	membrane
FT	0051260	biological_process	protein homooligomerization
FT	0071805	biological_process	potassium ion transmembrane transport
FT	0097014	cellular_component	ciliary plasm
FT	0098655	biological_process	monoatomic cation transmembrane transport
FU	0005249	molecular_function	voltage-gated potassium channel activity
FU	0005737	cellular_component	cytoplasm
FU	0005739	cellular_component	mitochondrion
FU	0006813	biological_process	potassium ion transport
FU	0008076	cellular_component	voltage-gated potassium channel complex
FU	0015272	molecular_function	ATP-activated inward rectifier potassium channel activity
FU	0016020	cellular_component	membrane
FU	0051260	biological_process	protein homooligomerization
FU	0071805	biological_process	potassium ion transmembrane transport
FU	0097014	cellular_component	ciliary plasm
FU	0098655	biological_process	monoatomic cation transmembrane transport
FW	0005739	cellular_component	mitochondrion
FW	0046685	biological_process	response to arsenic-containing substance
FX	0005737	cellular_component	cytoplasm
FX	0005739	cellular_component	mitochondrion
FX	0005829	cellular_component	cytosol
FX	0020023	cellular_component	kinetoplast

Functional Information from PDB Data

site_id	AC1
Number of Residues	3
Details	binding site for residue MG

Chain	Residue
FP	ASN345
FP	PRO346
FX	SER6

site_id	AC2
Number of Residues	12
Details	binding site for residue MET FW 1

Chain	Residue
FW	ALA17
FW	ARG18
FW	THR19
FW	SER38
FW	SER66
FW	THR68
FN	PRO254
FW	SER2
FW	THR3
FW	THR14
FW	ASN15
FW	ARG16

site_id	AC3
Number of Residues	12
Details	binding site for residue MET FW 1

Chain	Residue
FN	PRO254
FW	SER2
FW	THR3
FW	THR14
FW	ASN15
FW	ARG16
FW	ALA17
FW	ARG18
FW	THR19
FW	SER38
FW	SER66
FW	THR68

site_id	AC4
Number of Residues	9
Details	binding site for residue PM8

Chain	Residue
Fb	GLN29
Fb	PHE62
Fb	TYR65
Fb	SER66
Fb	GLU68
Fb	VAL74
Fb	LEU77
Fc	ASN104
Fc	SER105

site_id	AC5
Number of Residues	4
Details	binding site for residue ZN

Chain	Residue
Fd	CYS84
Fd	CYS87
Fd	CYS105
Fd	CYS108

site_id	AC6
Number of Residues	6
Details	binding site for residue U CA 1

Chain	Residue
CA	A2
CA	A3
CA	A75
CA	A76
CA	U117
CA	U118

site_id	AC7
Number of Residues	6
Details	binding site for residue U CA 1

Chain	Residue
CA	A2
CA	A3
CA	A75
CA	A76
CA	U117
CA	U118

Functional Information from PROSITE/UniProt

site_id	PS00012
Number of Residues	16
Details	PHOSPHOPANTETHEINE Phosphopantetheine attachment site. DLGLNSLDVVEVVFAI

Chain	Residue	Details
Fc	ASP100-ILE115

site_id	PS00327
Number of Residues	12
Details	BACTERIAL_OPSIN_RET Bacterial rhodopsins retinal binding site. IRVIDVaAKmSY

Chain	Residue	Details
F1	ILE86-TYR97

site_id	PS00599
Number of Residues	10
Details	AA_TRANSFER_CLASS_2 Aminotransferases class-II pyridoxal-phosphate attachment site. TWSKGVALVA

Chain	Residue	Details
FA	THR51-ALA60

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)