6SG9
Head domain of the mt-SSU assemblosome from Trypanosoma brucei
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (CE) | uS5m | polymer | 435 | 50147.4 | 1 | Trypanosoma brucei brucei | ||
| 2 | B (CK) | uS11m | polymer | 326 | 37954.0 | 1 | UniProt (Q389T7) | Trypanosoma brucei brucei | |
| 3 | C (Cn) | mS38 | polymer | 250 | 28240.6 | 1 | UniProt (Q57VQ9) | Trypanosoma brucei brucei | |
| 4 | D (FJ) | mt-SAF18 | polymer | 362 | 42508.0 | 1 | UniProt (D0A8R9) | Trypanosoma brucei brucei | |
| 5 | E (FY) | mt-SAF28 | polymer | 188 | 21468.7 | 1 | UniProt (A0A3L6L5M9) | Trypanosoma brucei brucei | |
| 6 | F (Fa) | mt-SAF30 | polymer | 171 | 19659.8 | 1 | UniProt (Q57VU7) | Trypanosoma brucei brucei | |
| 7 | G (CA) | 9S rRNA | polymer | 802 | 256380.7 | 1 | Trypanosoma brucei brucei | ||
| 8 | H (CC) | uS3m | polymer | 74 | 9070.9 | 1 | Trypanosoma brucei brucei | ||
| 9 | I (CI) | uS9m | polymer | 443 | 50201.0 | 1 | UniProt (Q57W62) Pfam (PF00380) | Trypanosoma brucei brucei | |
| 10 | J (CJ) | uS10m | polymer | 817 | 94321.1 | 1 | Trypanosoma brucei brucei | ||
| 11 | K (CN) | uS14m | polymer | 166 | 19900.0 | 1 | UniProt (Q580I0) | Trypanosoma brucei brucei | |
| 12 | L (CS) | uS19m | polymer | 244 | 28364.6 | 1 | Trypanosoma brucei brucei | ||
| 13 | M (Cg) | mS29 | polymer | 498 | 57048.8 | 1 | UniProt (Q585C2) Pfam (PF10236) | Trypanosoma brucei brucei | |
| 14 | N (Ci) | mS33 | polymer | 181 | 21244.1 | 1 | UniProt (Q57WW0) | Trypanosoma brucei brucei | |
| 15 | O (Ck) | mS35 | polymer | 874 | 98377.8 | 1 | UniProt (Q387C7) | Trypanosoma brucei brucei | |
| 16 | P (DB) | mS49 | polymer | 1181 | 137234.1 | 1 | Trypanosoma brucei brucei | ||
| 17 | Q (DC) | mS50 | polymer | 1165 | 131719.3 | 1 | Trypanosoma brucei brucei | ||
| 18 | R (DE) | mS52 | polymer | 747 | 84998.2 | 1 | UniProt (Q386Q7) | Trypanosoma brucei brucei | |
| 19 | S (DF) | mS53 | polymer | 666 | 75310.9 | 1 | Trypanosoma brucei brucei | ||
| 20 | T (DG) | mS54 | polymer | 631 | 72046.0 | 1 | Trypanosoma brucei brucei | ||
| 21 | U (DH) | mS55 (KRIPP8) | polymer | 581 | 66676.7 | 1 | Trypanosoma brucei brucei | ||
| 22 | V (DJ) | mS57 | polymer | 396 | 45956.3 | 1 | UniProt (Q584U8) | Trypanosoma brucei brucei | |
| 23 | W (DK) | mS58 | polymer | 324 | 35623.9 | 1 | Trypanosoma brucei brucei | ||
| 24 | X (DT) | mS67 | polymer | 247 | 30096.1 | 1 | UniProt (Q586G5) Pfam (PF00581) | Trypanosoma brucei brucei | |
| 25 | Y (DV) | mS69 | polymer | 183 | 21589.7 | 1 | UniProt (Q57UZ6) | Trypanosoma brucei brucei | |
| 26 | Z (DW) | mS70 | polymer | 179 | 21247.4 | 1 | Trypanosoma brucei brucei | ||
| 27 | AA (DX) | mS71 | polymer | 169 | 20093.2 | 1 | UniProt (Q383G5) | Trypanosoma brucei brucei | |
| 28 | BA (DY) | mS72 | polymer | 163 | 19340.4 | 1 | UniProt (Q57YD4) | Trypanosoma brucei brucei | |
| 29 | CA (F1) | mt-SAF1 (RSM22) | polymer | 1041 | 119799.4 | 1 | UniProt (Q385R2) Pfam (PF09243) | Trypanosoma brucei brucei | |
| 30 | DA (F4) | mt-SAF4 | polymer | 811 | 91549.3 | 1 | Trypanosoma brucei brucei | ||
| 31 | EA (FD) | mt-SAF12 (KRIPP18) | polymer | 579 | 65049.2 | 1 | UniProt (Q583U2) | Trypanosoma brucei brucei | |
| 32 | FA (FF) | mt-SAF14 | polymer | 474 | 53320.8 | 1 | UniProt (Q57W60) Pfam (PF01795) | Trypanosoma brucei brucei | |
| 33 | GA (FG) | mt-SAF15 | polymer | 463 | 53273.9 | 1 | Trypanosoma brucei brucei | ||
| 34 | HA (FH) | mt-SAF16 | polymer | 457 | 50911.4 | 1 | Trypanosoma brucei brucei | ||
| 35 | IA (FI) | mt-SAF17 | polymer | 445 | 50147.6 | 1 | Trypanosoma brucei brucei | ||
| 36 | JA (FK) | mt-SAF19 | polymer | 372 | 41236.4 | 1 | UniProt (Q57XS8) Pfam (PF02330) | Trypanosoma brucei brucei | |
| 37 | KA (FL) | mt-SAF20 | polymer | 353 | 40293.9 | 1 | Trypanosoma brucei brucei | ||
| 38 | LA (FV) | mt-SAF25 | polymer | 264 | 29470.5 | 1 | UniProt (Q38C60) | Trypanosoma brucei brucei | |
| 39 | MA (Fe) | mt-SAF34 | polymer | 123 | 14862.9 | 1 | UniProt (Q387L0) | Trypanosoma brucei brucei | |
| 40 | NA (Ua) | UNK-a | polymer | 70 | 5975.4 | 1 | Trypanosoma brucei brucei | ||
| 41 | OA (Ub) | UNK-b | polymer | 42 | 3592.4 | 1 | Trypanosoma brucei brucei | ||
| 42 | PA (Uc) | UNK-c | polymer | 12 | 1039.3 | 1 | Trypanosoma brucei brucei | ||
| 43 | QA (Ud) | UNK-d | polymer | 59 | 5039.2 | 1 | Trypanosoma brucei brucei | ||
| 44 | RA (Ue) | UNK-e | polymer | 29 | 2486.1 | 1 | Trypanosoma brucei brucei | ||
| 45 | SA (Uf) | UNK-f | polymer | 9 | 784.0 | 1 | Trypanosoma brucei brucei | ||
| 46 | TA (Ug) | UNK-g | polymer | 167 | 14230.5 | 1 | Trypanosoma brucei brucei | ||
| 47 | UA (Uh) | UNK-h | polymer | 255 | 21719.7 | 1 | Trypanosoma brucei brucei | ||
| 48 | VA (Ui) | UNK-i | polymer | 32 | 2741.4 | 1 | Trypanosoma brucei brucei | ||
| 49 | WA (Uj) | UNK-j | polymer | 19 | 1635.0 | 1 | Trypanosoma brucei brucei | ||
| 50 | XA (Uk) | UNK-k | polymer | 27 | 2315.8 | 1 | Trypanosoma brucei brucei | ||
| 51 | YA (Ul) | UNK-l | polymer | 14 | 1209.5 | 1 | Trypanosoma brucei brucei | ||
| 52 | ZA (Um) | UNK-m | polymer | 11 | 954.2 | 1 | Trypanosoma brucei brucei | ||
| 53 | AB (Ux) | UNK-x | polymer | 108 | 9209.3 | 1 | Trypanosoma brucei brucei | ||
| 54 | BB (CgA) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 1 | Chemie (GTP) | |||
| 55 | CB (CgB) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 56 | DB, GB, HB, IB, JB (F1A, FGA, FLA, FLB, FeA) | ZINC ION | non-polymer | 65.4 | 5 | Chemie (ZN) | |||
| 57 | EB, FB (F1B, FFA) | S-ADENOSYL-L-HOMOCYSTEINE | non-polymer | 384.4 | 2 | Chemie (SAH) | |||
| 58 | KB (CgC) | water | water | 18.0 | 3 | Chemie (HOH) |
Sequence modifications
CK: 1 - 326 (UniProt: Q389T7)
Fa: 1 - 171 (UniProt: Q57VU7)
CI: 1 - 443 (UniProt: Q57W62)
Cg: 1 - 498 (UniProt: Q585C2)
Ck: 1 - 874 (UniProt: Q387C7)
DV: 1 - 183 (UniProt: Q57UZ6)
DY: 1 - 163 (UniProt: Q57YD4)
F1: 1 - 1041 (UniProt: Q385R2)
FF: 1 - 474 (UniProt: Q57W60)
FK: 1 - 372 (UniProt: Q57XS8)
| PDB | External Database | Details |
|---|---|---|
| Arg 3 | Gln 3 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 73 | Val 73 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 370 | Val 370 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Val 181 | Ala 181 | conflict |
| Arg 498 | Met 498 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ser 107 | Leu 107 | conflict |
| Phe 144 | Leu 144 | conflict |
| Tyr 253 | Phe 253 | conflict |
| Glu 339 | Val 339 | conflict |
| Gly 871 | Glu 871 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 163 | Thr 163 | conflict |
| PDB | External Database | Details |
|---|---|---|
| His 34 | Asp 34 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ser 707 | Gly 707 | conflict |
| Thr 973 | Met 973 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 70 | Pro 70 | conflict |
| Phe 179 | Leu 179 | conflict |
| PDB | External Database | Details |
|---|---|---|
| His 38 | Arg 38 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 53 |
| Total formula weight | 2279666.7 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 1643.4 | |
| All* | Total formula weight | 2281310.0 |
