Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6SG9

Head domain of the mt-SSU assemblosome from Trypanosoma brucei

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (CE)	uS5m	polymer	435	50147.4	1		Trypanosoma brucei brucei
2	B (CK)	uS11m	polymer	326	37954.0	1	UniProt (Q389T7)	Trypanosoma brucei brucei
3	C (Cn)	mS38	polymer	250	28240.6	1	UniProt (Q57VQ9)	Trypanosoma brucei brucei
4	D (FJ)	mt-SAF18	polymer	362	42508.0	1	UniProt (D0A8R9)	Trypanosoma brucei brucei
5	E (FY)	mt-SAF28	polymer	188	21468.7	1	UniProt (A0A3L6L5M9)	Trypanosoma brucei brucei
6	F (Fa)	mt-SAF30	polymer	171	19659.8	1	UniProt (Q57VU7)	Trypanosoma brucei brucei
7	G (CA)	9S rRNA	polymer	802	256380.7	1		Trypanosoma brucei brucei
8	H (CC)	uS3m	polymer	74	9070.9	1		Trypanosoma brucei brucei
9	I (CI)	uS9m	polymer	443	50201.0	1	UniProt (Q57W62) Pfam (PF00380)	Trypanosoma brucei brucei
10	J (CJ)	uS10m	polymer	817	94321.1	1		Trypanosoma brucei brucei
11	K (CN)	uS14m	polymer	166	19900.0	1	UniProt (Q580I0)	Trypanosoma brucei brucei
12	L (CS)	uS19m	polymer	244	28364.6	1		Trypanosoma brucei brucei
13	M (Cg)	mS29	polymer	498	57048.8	1	UniProt (Q585C2) Pfam (PF10236)	Trypanosoma brucei brucei
14	N (Ci)	mS33	polymer	181	21244.1	1	UniProt (Q57WW0)	Trypanosoma brucei brucei
15	O (Ck)	mS35	polymer	874	98377.8	1	UniProt (Q387C7)	Trypanosoma brucei brucei
16	P (DB)	mS49	polymer	1181	137234.1	1		Trypanosoma brucei brucei
17	Q (DC)	mS50	polymer	1165	131719.3	1		Trypanosoma brucei brucei
18	R (DE)	mS52	polymer	747	84998.2	1	UniProt (Q386Q7)	Trypanosoma brucei brucei
19	S (DF)	mS53	polymer	666	75310.9	1		Trypanosoma brucei brucei
20	T (DG)	mS54	polymer	631	72046.0	1		Trypanosoma brucei brucei
21	U (DH)	mS55 (KRIPP8)	polymer	581	66676.7	1		Trypanosoma brucei brucei
22	V (DJ)	mS57	polymer	396	45956.3	1	UniProt (Q584U8)	Trypanosoma brucei brucei
23	W (DK)	mS58	polymer	324	35623.9	1		Trypanosoma brucei brucei
24	X (DT)	mS67	polymer	247	30096.1	1	UniProt (Q586G5) Pfam (PF00581)	Trypanosoma brucei brucei
25	Y (DV)	mS69	polymer	183	21589.7	1	UniProt (Q57UZ6)	Trypanosoma brucei brucei
26	Z (DW)	mS70	polymer	179	21247.4	1		Trypanosoma brucei brucei
27	AA (DX)	mS71	polymer	169	20093.2	1	UniProt (Q383G5)	Trypanosoma brucei brucei
28	BA (DY)	mS72	polymer	163	19340.4	1	UniProt (Q57YD4)	Trypanosoma brucei brucei
29	CA (F1)	mt-SAF1 (RSM22)	polymer	1041	119799.4	1	UniProt (Q385R2) Pfam (PF09243)	Trypanosoma brucei brucei
30	DA (F4)	mt-SAF4	polymer	811	91549.3	1		Trypanosoma brucei brucei
31	EA (FD)	mt-SAF12 (KRIPP18)	polymer	579	65049.2	1	UniProt (Q583U2)	Trypanosoma brucei brucei
32	FA (FF)	mt-SAF14	polymer	474	53320.8	1	UniProt (Q57W60) Pfam (PF01795)	Trypanosoma brucei brucei
33	GA (FG)	mt-SAF15	polymer	463	53273.9	1		Trypanosoma brucei brucei
34	HA (FH)	mt-SAF16	polymer	457	50911.4	1		Trypanosoma brucei brucei
35	IA (FI)	mt-SAF17	polymer	445	50147.6	1		Trypanosoma brucei brucei
36	JA (FK)	mt-SAF19	polymer	372	41236.4	1	UniProt (Q57XS8) Pfam (PF02330)	Trypanosoma brucei brucei
37	KA (FL)	mt-SAF20	polymer	353	40293.9	1		Trypanosoma brucei brucei
38	LA (FV)	mt-SAF25	polymer	264	29470.5	1	UniProt (Q38C60)	Trypanosoma brucei brucei
39	MA (Fe)	mt-SAF34	polymer	123	14862.9	1	UniProt (Q387L0)	Trypanosoma brucei brucei
40	NA (Ua)	UNK-a	polymer	70	5975.4	1		Trypanosoma brucei brucei
41	OA (Ub)	UNK-b	polymer	42	3592.4	1		Trypanosoma brucei brucei
42	PA (Uc)	UNK-c	polymer	12	1039.3	1		Trypanosoma brucei brucei
43	QA (Ud)	UNK-d	polymer	59	5039.2	1		Trypanosoma brucei brucei
44	RA (Ue)	UNK-e	polymer	29	2486.1	1		Trypanosoma brucei brucei
45	SA (Uf)	UNK-f	polymer	9	784.0	1		Trypanosoma brucei brucei
46	TA (Ug)	UNK-g	polymer	167	14230.5	1		Trypanosoma brucei brucei
47	UA (Uh)	UNK-h	polymer	255	21719.7	1		Trypanosoma brucei brucei
48	VA (Ui)	UNK-i	polymer	32	2741.4	1		Trypanosoma brucei brucei
49	WA (Uj)	UNK-j	polymer	19	1635.0	1		Trypanosoma brucei brucei
50	XA (Uk)	UNK-k	polymer	27	2315.8	1		Trypanosoma brucei brucei
51	YA (Ul)	UNK-l	polymer	14	1209.5	1		Trypanosoma brucei brucei
52	ZA (Um)	UNK-m	polymer	11	954.2	1		Trypanosoma brucei brucei
53	AB (Ux)	UNK-x	polymer	108	9209.3	1		Trypanosoma brucei brucei
54	BB (CgA)	GUANOSINE-5'-TRIPHOSPHATE	non-polymer		523.2	1	Chemie (GTP) PubChem (177679032) PubChem (135400627) PubChem (135487750) PubChem (136088935) PubChem (136803486) PubChem (135398633) PubChem (135544356) PubChem (135547949) PubChem (135600366) PubChem (135749822) PubChem (136005188) PubChem (136073923) PubChem (136240914) PubChem (136664747) PubChem (136772743) PubChem (136772744) PubChem (136803487) PubChem (137286749) PubChem (164715984) PubChem (171699466)
55	CB (CgB)	MAGNESIUM ION	non-polymer		24.3	1	Chemie (MG) PubChem (888)
56	DB, GB, HB, IB, JB (F1A, FGA, FLA, FLB, FeA)	ZINC ION	non-polymer		65.4	5	Chemie (ZN)
57	EB, FB (F1B, FFA)	S-ADENOSYL-L-HOMOCYSTEINE	non-polymer		384.4	2	Chemie (SAH) PubChem (16760024) PubChem (193) PubChem (25210495) PubChem (13792) PubChem (177678424) PubChem (44361184) PubChem (21125603) PubChem (46936206) PubChem (50989525) PubChem (25203782) PubChem (51380914) PubChem (52224398) PubChem (189149) PubChem (57544532) PubChem (439155) PubChem (59046843) PubChem (59170628) PubChem (59576228) PubChem (66805708) PubChem (70689219) PubChem (70702054) PubChem (70832431) PubChem (52224400) PubChem (5284331) PubChem (6419189) PubChem (118374891) PubChem (118560068) PubChem (71170554) PubChem (13231890) PubChem (164157219) PubChem (126969526) PubChem (129105892) PubChem (143518505) PubChem (154578335) PubChem (163054214) PubChem (163335525)
58	KB (CgC)	water	water		18.0	3	Chemie (HOH)

Sequence modifications

CK: 1 - 326 (UniProt: Q389T7)

PDB	External Database	Details
Arg 3	Gln 3	conflict

Fa: 1 - 171 (UniProt: Q57VU7)

PDB	External Database	Details
Ala 73	Val 73	conflict

CI: 1 - 443 (UniProt: Q57W62)

PDB	External Database	Details
Ala 370	Val 370	conflict

Cg: 1 - 498 (UniProt: Q585C2)

PDB	External Database	Details
Val 181	Ala 181	conflict
Arg 498	Met 498	conflict

Ck: 1 - 874 (UniProt: Q387C7)

PDB	External Database	Details
Ser 107	Leu 107	conflict
Phe 144	Leu 144	conflict
Tyr 253	Phe 253	conflict
Glu 339	Val 339	conflict
Gly 871	Glu 871	conflict

DV: 1 - 183 (UniProt: Q57UZ6)

PDB	External Database	Details
Ala 163	Thr 163	conflict

DY: 1 - 163 (UniProt: Q57YD4)

PDB	External Database	Details
His 34	Asp 34	conflict

F1: 1 - 1041 (UniProt: Q385R2)

PDB	External Database	Details
Ser 707	Gly 707	conflict
Thr 973	Met 973	conflict

FF: 1 - 474 (UniProt: Q57W60)

PDB	External Database	Details
Ala 70	Pro 70	conflict
Phe 179	Leu 179	conflict

FK: 1 - 372 (UniProt: Q57XS8)

PDB	External Database	Details
His 38	Arg 38	conflict

Sequence viewer

Contents of the asymmetric unit

Polymers	Number of chains	53
Polymers	Total formula weight	2279666.7
Non-Polymers*	Number of molecules	9
Non-Polymers*	Total formula weight	1643.4
All*	Total formula weight	2281310.0

*Water molecules are not included.

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)