Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6SG9

Head domain of the mt-SSU assemblosome from Trypanosoma brucei

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
CE	0003735	molecular_function	structural constituent of ribosome
CE	0005840	cellular_component	ribosome
CE	0006412	biological_process	translation
Cg	0003735	molecular_function	structural constituent of ribosome
Cg	0005737	cellular_component	cytoplasm
Cg	0005739	cellular_component	mitochondrion
Cg	0005763	cellular_component	mitochondrial small ribosomal subunit
Cg	0031981	cellular_component	nuclear lumen
Cg	0097014	cellular_component	ciliary plasm
Ci	0005739	cellular_component	mitochondrion
Ci	0005763	cellular_component	mitochondrial small ribosomal subunit
CI	0003735	molecular_function	structural constituent of ribosome
CI	0005739	cellular_component	mitochondrion
CI	0005763	cellular_component	mitochondrial small ribosomal subunit
CI	0005840	cellular_component	ribosome
CI	0006412	biological_process	translation
CI	0020023	cellular_component	kinetoplast
Ck	0000963	biological_process	mitochondrial RNA processing
Ck	0003723	molecular_function	RNA binding
Ck	0005737	cellular_component	cytoplasm
Ck	0005739	cellular_component	mitochondrion
Ck	0031019	cellular_component	mitochondrial mRNA editing complex
Ck	0043631	biological_process	obsolete RNA polyadenylation
Ck	0048255	biological_process	mRNA stabilization
CK	0003735	molecular_function	structural constituent of ribosome
CK	0005739	cellular_component	mitochondrion
CK	0005763	cellular_component	mitochondrial small ribosomal subunit
CK	0005840	cellular_component	ribosome
CK	0006412	biological_process	translation
Cn	0005739	cellular_component	mitochondrion
Cn	0020023	cellular_component	kinetoplast
CN	0005739	cellular_component	mitochondrion
CN	0005763	cellular_component	mitochondrial small ribosomal subunit
CN	0020023	cellular_component	kinetoplast
DE	0000963	biological_process	mitochondrial RNA processing
DE	0003723	molecular_function	RNA binding
DE	0005739	cellular_component	mitochondrion
DE	0020023	cellular_component	kinetoplast
DE	0031019	cellular_component	mitochondrial mRNA editing complex
DE	0043631	biological_process	obsolete RNA polyadenylation
DE	0048255	biological_process	mRNA stabilization
DJ	0005737	cellular_component	cytoplasm
DJ	0005739	cellular_component	mitochondrion
DJ	0005763	cellular_component	mitochondrial small ribosomal subunit
DT	0004792	molecular_function	thiosulfate-cyanide sulfurtransferase activity
DT	0005739	cellular_component	mitochondrion
DT	0005763	cellular_component	mitochondrial small ribosomal subunit
DV	0005739	cellular_component	mitochondrion
DV	0005763	cellular_component	mitochondrial small ribosomal subunit
DX	0005739	cellular_component	mitochondrion
DY	0005739	cellular_component	mitochondrion
DY	0005763	cellular_component	mitochondrial small ribosomal subunit
DY	0020023	cellular_component	kinetoplast
F1	0003735	molecular_function	structural constituent of ribosome
F1	0005739	cellular_component	mitochondrion
F1	0005763	cellular_component	mitochondrial small ribosomal subunit
F1	0006412	biological_process	translation
F1	0008168	molecular_function	methyltransferase activity
Fa	0005739	cellular_component	mitochondrion
Fa	0020023	cellular_component	kinetoplast
FD	0005739	cellular_component	mitochondrion
Fe	0005737	cellular_component	cytoplasm
Fe	0005739	cellular_component	mitochondrion
FF	0005739	cellular_component	mitochondrion
FF	0005759	cellular_component	mitochondrial matrix
FF	0008168	molecular_function	methyltransferase activity
FF	0070475	biological_process	rRNA base methylation
FF	0071424	molecular_function	rRNA (cytosine-N4-)-methyltransferase activity
FH	0005759	cellular_component	mitochondrial matrix
FK	0000957	biological_process	mitochondrial RNA catabolic process
FK	0005739	cellular_component	mitochondrion
FK	0005759	cellular_component	mitochondrial matrix
FK	0062153	molecular_function	C5-methylcytidine-containing RNA reader activity
FV	0005759	cellular_component	mitochondrial matrix

Functional Information from PDB Data

site_id	AC1
Number of Residues	17
Details	binding site for residue GTP

Chain	Residue
Cg	ARG96
Cg	SER156
Cg	ALA157
Cg	THR358
Cg	ARG359
Cg	ASP360
Cg	PHE412
Cg	PRO452
Cg	GLN453
Cg	GLN99
Cg	GLY108
Cg	PHE109
Cg	LEU110
Cg	THR151
Cg	GLY152
Cg	CYS153
Cg	LYS155

site_id	AC2
Number of Residues	17
Details	binding site for residue GTP

Chain	Residue
Cg	ARG96
Cg	GLN99
Cg	GLY108
Cg	PHE109
Cg	LEU110
Cg	THR151
Cg	GLY152
Cg	CYS153
Cg	LYS155
Cg	SER156
Cg	ALA157
Cg	THR358
Cg	ARG359
Cg	ASP360
Cg	PHE412
Cg	PRO452
Cg	GLN453

site_id	AC3
Number of Residues	18
Details	binding site for residue ZN

Chain	Residue
F1	TYR256
F1	MET264
F1	PHE290
F1	GLY291
F1	GLY293
F1	THR294
F1	THR296
F1	GLU483
F1	PRO484
F1	SER485
F1	MET488
F1	ALA524
F1	TYR525
F1	GLU529
F1	GLU534
F1	CYS591
F1	CYS597
F1	CYS614

site_id	AC4
Number of Residues	18
Details	binding site for residue ZN

Chain	Residue
F1	TYR256
F1	MET264
F1	PHE290
F1	GLY291
F1	GLY293
F1	THR294
F1	THR296
F1	GLU483
F1	PRO484
F1	SER485
F1	MET488
F1	ALA524
F1	TYR525
F1	GLU529
F1	GLU534
F1	CYS591
F1	CYS597
F1	CYS614

site_id	AC5
Number of Residues	15
Details	binding site for residue MET FF 1

Chain	Residue
FF	LYS2
FF	HIS18
FF	CYS133
FF	THR134
FF	LEU135
FF	GLY136
FF	HIS140
FF	ASP158
FF	CYS159
FF	MET186
FF	ASP204
FF	SER208
FF	GLN211
FF	PHE233
FF	GLU332

site_id	AC6
Number of Residues	5
Details	binding site for residue ZN

Chain	Residue
FG	CYS128
FG	CYS143
FG	ARG154
FG	CYS155
FG	HIS160

site_id	AC7
Number of Residues	7
Details	binding site for residue ZN

Chain	Residue
FL	HIS117
FL	HIS119
FL	ASP121
FL	HIS255
FL	ASP274
FL	HIS314
FL	LEU353

site_id	AC8
Number of Residues	7
Details	binding site for residue ZN

Chain	Residue
FL	ASP121
FL	HIS255
FL	ASP274
FL	HIS314
FL	LEU353
FL	HIS117
FL	HIS119

site_id	AC9
Number of Residues	4
Details	binding site for residue ZN

Chain	Residue
Fe	CYS59
Fe	CYS62
Fe	CYS85
Fe	HIS94

Functional Information from PROSITE/UniProt

site_id	PS00327
Number of Residues	12
Details	BACTERIAL_OPSIN_RET Bacterial rhodopsins retinal binding site. IRVIDVaAKmSY

Chain	Residue	Details
F1	ILE86-TYR97

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)