6S8H
Cryo-EM structure of LptB2FG in complex with LPS
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Lipopolysaccharide ABC transporter, ATP-binding protein LptB | polymer | 241 | 26837.7 | 2 | UniProt (E7T9E6) Pfam (PF00005) Pfam (PF12399) UniProt (by SIFTS) (P0A9V4) In PDB | Shigella flexneri | |
2 | F | Lipopolysaccharide export system permease protein LptF | polymer | 366 | 40345.4 | 1 | UniProt (P0AFA1) Pfam (PF03739) In PDB | Shigella flexneri | |
3 | G | Inner membrane protein yjgQ | polymer | 360 | 39622.4 | 1 | UniProt (A0A2S4N3I3) Pfam (PF03739) UniProt (by SIFTS) (A0A0H2V3J7) In PDB | Shigella flexneri | LPS export ABC transporter permease LptG |
4 | F, G | Lauryl Maltose Neopentyl Glycol | non-polymer | 1005.2 | 2 | Chemie (LMN) | |||
5 | F | (2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-[(2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-5-[(2~{S},3~{S},4~{R},5~{R},6~{R})-6-[(1~{S})-1,2-bis(oxidanyl)ethyl]-4-[(2~{R},3~{S},4~{R},5~{S},6~{R})-6-[(1~{S})-2-[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-[(1~{S})-1,2-bis(oxidanyl)ethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-1-oxidanyl-ethyl]-3,4-bis(oxidanyl)-5-phosphonooxy-oxan-2-yl]oxy-3-oxidanyl-5-phosphonooxy-oxan-2-yl]oxy-2-carboxy-2-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-5-[[(3~{R})-3-dodecanoyloxytetradecanoyl]amino]-6-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-3-oxidanyl-5-[[(3~{R})-3-oxidanyltetradecanoyl]amino]-4-[(3~{R})-3-oxidanyltetradecanoyl]oxy-6-phosphonooxy-oxan-2-yl]methoxy]-3-phosphonooxy-4-[(3~{R})-3-tetradecanoyloxytetradecanoyl]oxy-oxan-2-yl]methoxy]oxan-4-yl]oxy-4,5-bis(oxidanyl)oxane-2-carboxylic acid | non-polymer | 2975.2 | 1 | Chemie (JSG) | |||
6 | F, G | 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione | non-polymer | 322.4 | 2 | Chemie (DCQ) | |||
7 | F, G | DODECYL-BETA-D-MALTOSIDE | non-polymer | 510.6 | 2 | Chemie (LMT) |
Sequence modifications
F: 1 - 366 (UniProt: P0AFA1)
PDB | External Database | Details |
---|---|---|
Val 274 | Phe 274 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 133643.2 | |
Non-Polymers* | Number of molecules | 7 |
Total formula weight | 6651.7 | |
All* | Total formula weight | 140294.8 |