6R92
Cryo-EM structure of NCP-THF2(+1)-UV-DDB class B
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | I | Human alpha-satellite DNA (145-MER) | polymer | 145 | 44756.6 | 1 | Homo sapiens | ||
2 | J | Human alpha-satellite DNA (145-MER) with abasic sites at positions 93-94 | polymer | 145 | 44452.4 | 1 | Homo sapiens | ||
3 | L | DNA damage-binding protein 2 | polymer | 450 | 50601.8 | 1 | UniProt (Q92466) Pfam (PF00400) In PDB | Homo sapiens (Human) | DDB p48 subunit,DDBb,Damage-specific DNA-binding protein 2,UV-damaged DNA-binding protein 2,UV-DDB 2 |
4 | A, E | Histone H3.1 | polymer | 139 | 15719.4 | 2 | UniProt (P68431) Pfam (PF00125) In PDB | Homo sapiens (Human) | Histone H3/a,Histone H3/b,Histone H3/c,Histone H3/d,Histone H3/f,Histone H3/h,Histone H3/i,Histone H3/j,Histone H3/k,Histone H3/l |
5 | B, F | Histone H4 | polymer | 106 | 11676.7 | 2 | UniProt (P62805) Pfam (PF15511) In PDB | Homo sapiens (Human) | |
6 | C, G | Histone H2A type 1-B/E | polymer | 133 | 14447.8 | 2 | UniProt (P04908) Pfam (PF00125) Pfam (PF16211) In PDB | Homo sapiens (Human) | Histone H2A.2,Histone H2A/a,Histone H2A/m |
7 | D, H | Histone H2B type 1-J | polymer | 129 | 14217.5 | 2 | UniProt (P06899) Pfam (PF00125) In PDB | Homo sapiens (Human) | Histone H2B.1,Histone H2B.r,H2B/r |
8 | K | DNA damage-binding protein 1,DNA damage-binding protein 1 | polymer | 1163 | 129766.3 | 1 | UniProt (Q16531) Pfam (PF10433) Pfam (PF03178) In PDB | Homo sapiens (Human) | DDB p127 subunit,DNA damage-binding protein a,DDBa,Damage-specific DNA-binding protein 1,HBV X-associated protein 1,XAP-1,UV-damaged DNA-binding factor,UV-damaged DNA-binding protein 1,UV-DDB 1,XPE-binding factor,XPE-BF,Xeroderma pigmentosum group E-complementing protein,XPCe,DDB p127 subunit,DNA damage-binding protein a,DDBa,Damage-specific DNA-binding protein 1,HBV X-associated protein 1,XAP-1,UV-damaged DNA-binding factor,UV-damaged DNA-binding protein 1,UV-DDB 1,XPE-binding factor,XPE-BF,Xeroderma pigmentosum group E-complementing protein,XPCe |
Sequence modifications
L: 1 - 427 (UniProt: Q92466)
A, E: 1 - 136 (UniProt: P68431)
B, F: 1 - 103 (UniProt: P62805)
C, G: 1 - 130 (UniProt: P04908)
D, H: 1 - 126 (UniProt: P06899)
K: 1 - 395 (UniProt: Q16531)
K: 706 - 1140 (UniProt: Q16531)
PDB | External Database | Details |
---|---|---|
Met -22 | - | initiating methionine |
Ala -21 | - | expression tag |
Ser -20 | - | expression tag |
Trp -19 | - | expression tag |
Ser -18 | - | expression tag |
His -17 | - | expression tag |
Pro -16 | - | expression tag |
Gln -15 | - | expression tag |
Phe -14 | - | expression tag |
Glu -13 | - | expression tag |
Lys -12 | - | expression tag |
Val -11 | - | expression tag |
Asp -10 | - | expression tag |
Glu -9 | - | expression tag |
Asn -8 | - | expression tag |
Leu -7 | - | expression tag |
Tyr -6 | - | expression tag |
Phe -5 | - | expression tag |
Gln -4 | - | expression tag |
Gly -3 | - | expression tag |
Gly -2 | - | expression tag |
Gly -1 | - | expression tag |
Arg 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
His 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
His 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
His 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
His 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met -22 | - | initiating methionine |
Ala -21 | - | expression tag |
Ser -20 | - | expression tag |
Trp -19 | - | expression tag |
Ser -18 | - | expression tag |
His -17 | - | expression tag |
Pro -16 | - | expression tag |
Gln -15 | - | expression tag |
Phe -14 | - | expression tag |
Glu -13 | - | expression tag |
Lys -12 | - | expression tag |
Val -11 | - | expression tag |
Asp -10 | - | expression tag |
Glu -9 | - | expression tag |
Asn -8 | - | expression tag |
Leu -7 | - | expression tag |
Tyr -6 | - | expression tag |
Phe -5 | - | expression tag |
Gln -4 | - | expression tag |
Gly -3 | - | expression tag |
Gly -2 | - | expression tag |
Gly -1 | - | expression tag |
Arg 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ile 396 | - | linker |
His 397 | - | linker |
Glu 398 | - | linker |
His 399 | - | linker |
Ala 400 | - | linker |
Ser 401 | - | linker |
Ile 402 | - | linker |
Asp 403 | - | linker |
Leu 404 | - | linker |
Pro 405 | - | linker |
Gly 406 | - | linker |
Ile 407 | - | linker |
Lys 408 | - | linker |
Gly 409 | - | linker |
Leu 410 | - | linker |
Trp 411 | - | linker |
Pro 412 | - | linker |
Leu 413 | - | linker |
Arg 414 | - | linker |
Ser 415 | - | linker |
Asp 416 | - | linker |
Pro 417 | - | linker |
Asn 418 | - | linker |
Arg 419 | - | linker |
Glu 420 | - | linker |
Thr 421 | - | linker |
Asp 422 | - | linker |
Asp 423 | - | linker |
Thr 424 | - | linker |
Leu 425 | - | linker |
Val 426 | - | linker |
Leu 427 | - | linker |
Ser 428 | - | linker |
Phe 429 | - | linker |
Val 430 | - | linker |
Gly 431 | - | linker |
Gln 432 | - | linker |
Thr 433 | - | linker |
Arg 434 | - | linker |
Val 435 | - | linker |
Leu 436 | - | linker |
Met 437 | - | linker |
Leu 438 | - | linker |
Asn 439 | - | linker |
Gly 440 | - | linker |
Glu 441 | - | linker |
Glu 442 | - | linker |
Val 443 | - | linker |
Glu 444 | - | linker |
Glu 445 | - | linker |
Thr 446 | - | linker |
Glu 447 | - | linker |
Leu 448 | - | linker |
Met 449 | - | linker |
Gly 450 | - | linker |
Phe 451 | - | linker |
Val 452 | - | linker |
Asp 453 | - | linker |
Asp 454 | - | linker |
Gln 455 | - | linker |
Gln 456 | - | linker |
Thr 457 | - | linker |
Phe 458 | - | linker |
Phe 459 | - | linker |
Cys 460 | - | linker |
Gly 461 | - | linker |
Asn 462 | - | linker |
Val 463 | - | linker |
Ala 464 | - | linker |
His 465 | - | linker |
Gln 466 | - | linker |
Gln 467 | - | linker |
Leu 468 | - | linker |
Ile 469 | - | linker |
Gln 470 | - | linker |
Ile 471 | - | linker |
Thr 472 | - | linker |
Ser 473 | - | linker |
Ala 474 | - | linker |
Ser 475 | - | linker |
Val 476 | - | linker |
Arg 477 | - | linker |
Leu 478 | - | linker |
Val 479 | - | linker |
Ser 480 | - | linker |
Gln 481 | - | linker |
Glu 482 | - | linker |
Pro 483 | - | linker |
Lys 484 | - | linker |
Ala 485 | - | linker |
Leu 486 | - | linker |
Val 487 | - | linker |
Ser 488 | - | linker |
Glu 489 | - | linker |
Trp 490 | - | linker |
Lys 491 | - | linker |
Glu 492 | - | linker |
Pro 493 | - | linker |
Gln 494 | - | linker |
Ala 495 | - | linker |
Lys 496 | - | linker |
Asn 497 | - | linker |
Ile 498 | - | linker |
Ser 499 | - | linker |
Val 500 | - | linker |
Ala 501 | - | linker |
Ser 502 | - | linker |
Cys 503 | - | linker |
Asn 504 | - | linker |
Ser 505 | - | linker |
Ser 506 | - | linker |
Gln 507 | - | linker |
Val 508 | - | linker |
Val 509 | - | linker |
Val 510 | - | linker |
Ala 511 | - | linker |
Val 512 | - | linker |
Gly 513 | - | linker |
Arg 514 | - | linker |
Ala 515 | - | linker |
Leu 516 | - | linker |
Tyr 517 | - | linker |
Tyr 518 | - | linker |
Leu 519 | - | linker |
Gln 520 | - | linker |
Ile 521 | - | linker |
His 522 | - | linker |
Pro 523 | - | linker |
Gln 524 | - | linker |
Glu 525 | - | linker |
Leu 526 | - | linker |
Arg 527 | - | linker |
Gln 528 | - | linker |
Ile 529 | - | linker |
Ser 530 | - | linker |
His 531 | - | linker |
Thr 532 | - | linker |
Glu 533 | - | linker |
Met 534 | - | linker |
Glu 535 | - | linker |
His 536 | - | linker |
Glu 537 | - | linker |
Val 538 | - | linker |
Ala 539 | - | linker |
Cys 540 | - | linker |
Leu 541 | - | linker |
Asp 542 | - | linker |
Ile 543 | - | linker |
Thr 544 | - | linker |
Pro 545 | - | linker |
Leu 546 | - | linker |
Gly 547 | - | linker |
Asp 548 | - | linker |
Ser 549 | - | linker |
Asn 550 | - | linker |
Gly 551 | - | linker |
Leu 552 | - | linker |
Ser 553 | - | linker |
Pro 554 | - | linker |
Leu 555 | - | linker |
Cys 556 | - | linker |
Ala 557 | - | linker |
Ile 558 | - | linker |
Gly 559 | - | linker |
Leu 560 | - | linker |
Trp 561 | - | linker |
Thr 562 | - | linker |
Asp 563 | - | linker |
Ile 564 | - | linker |
Ser 565 | - | linker |
Ala 566 | - | linker |
Arg 567 | - | linker |
Ile 568 | - | linker |
Leu 569 | - | linker |
Lys 570 | - | linker |
Leu 571 | - | linker |
Pro 572 | - | linker |
Ser 573 | - | linker |
Phe 574 | - | linker |
Glu 575 | - | linker |
Leu 576 | - | linker |
Leu 577 | - | linker |
His 578 | - | linker |
Lys 579 | - | linker |
Glu 580 | - | linker |
Met 581 | - | linker |
Leu 582 | - | linker |
Gly 583 | - | linker |
Gly 584 | - | linker |
Glu 585 | - | linker |
Ile 586 | - | linker |
Ile 587 | - | linker |
Pro 588 | - | linker |
Arg 589 | - | linker |
Ser 590 | - | linker |
Ile 591 | - | linker |
Leu 592 | - | linker |
Met 593 | - | linker |
Thr 594 | - | linker |
Thr 595 | - | linker |
Phe 596 | - | linker |
Glu 597 | - | linker |
Ser 598 | - | linker |
Ser 599 | - | linker |
His 600 | - | linker |
Tyr 601 | - | linker |
Leu 602 | - | linker |
Leu 603 | - | linker |
Cys 604 | - | linker |
Ala 605 | - | linker |
Leu 606 | - | linker |
Gly 607 | - | linker |
Asp 608 | - | linker |
Gly 609 | - | linker |
Ala 610 | - | linker |
Leu 611 | - | linker |
Phe 612 | - | linker |
Tyr 613 | - | linker |
Phe 614 | - | linker |
Gly 615 | - | linker |
Leu 616 | - | linker |
Asn 617 | - | linker |
Ile 618 | - | linker |
Glu 619 | - | linker |
Thr 620 | - | linker |
Gly 621 | - | linker |
Leu 622 | - | linker |
Leu 623 | - | linker |
Ser 624 | - | linker |
Asp 625 | - | linker |
Arg 626 | - | linker |
Lys 627 | - | linker |
Lys 628 | - | linker |
Val 629 | - | linker |
Thr 630 | - | linker |
Leu 631 | - | linker |
Gly 632 | - | linker |
Thr 633 | - | linker |
Gln 634 | - | linker |
Pro 635 | - | linker |
Thr 636 | - | linker |
Val 637 | - | linker |
Leu 638 | - | linker |
Arg 639 | - | linker |
Thr 640 | - | linker |
Phe 641 | - | linker |
Arg 642 | - | linker |
Ser 643 | - | linker |
Leu 644 | - | linker |
Ser 645 | - | linker |
Thr 646 | - | linker |
Thr 647 | - | linker |
Asn 648 | - | linker |
Val 649 | - | linker |
Phe 650 | - | linker |
Ala 651 | - | linker |
Cys 652 | - | linker |
Ser 653 | - | linker |
Asp 654 | - | linker |
Arg 655 | - | linker |
Pro 656 | - | linker |
Thr 657 | - | linker |
Val 658 | - | linker |
Ile 659 | - | linker |
Tyr 660 | - | linker |
Ser 661 | - | linker |
Ser 662 | - | linker |
Asn 663 | - | linker |
His 664 | - | linker |
Lys 665 | - | linker |
Leu 666 | - | linker |
Val 667 | - | linker |
Phe 668 | - | linker |
Ser 669 | - | linker |
Asn 670 | - | linker |
Val 671 | - | linker |
Asn 672 | - | linker |
Leu 673 | - | linker |
Lys 674 | - | linker |
Glu 675 | - | linker |
Val 676 | - | linker |
Asn 677 | - | linker |
Tyr 678 | - | linker |
Met 679 | - | linker |
Cys 680 | - | linker |
Pro 681 | - | linker |
Leu 682 | - | linker |
Asn 683 | - | linker |
Ser 684 | - | linker |
Asp 685 | - | linker |
Gly 686 | - | linker |
Tyr 687 | - | linker |
Pro 688 | - | linker |
Asp 689 | - | linker |
Ser 690 | - | linker |
Leu 691 | - | linker |
Ala 692 | - | linker |
Leu 693 | - | linker |
Ala 694 | - | linker |
Asn 695 | - | linker |
Asn 696 | - | linker |
Ser 697 | - | linker |
Thr 698 | - | linker |
Leu 699 | - | linker |
Thr 700 | - | linker |
Ile 701 | - | linker |
Gly 702 | - | linker |
Thr 703 | - | linker |
Ile 704 | - | linker |
Asp 705 | - | linker |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 12 |
Total formula weight | 381700.2 | |
All* | Total formula weight | 381700.2 |