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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6Q97

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1123S ribosomal RNApolymer2903941526.41Escherichia coli
2216S ribosomal RNApolymer1534497406.01Escherichia coli
335S ribosomal RNApolymer12038790.11Escherichia coli
45SsrA-binding proteinpolymer14516638.21UniProt (P0A832)
Pfam (PF01668)
In PDB		Escherichia coliSmall protein B
56Nascent peptidepolymer282008.21Escherichia coli
68tRNA-Metpolymer7724728.71Escherichia coli
79mRNApolymer61892.21Escherichia coli
8B50S ribosomal protein L2polymer27029592.21UniProt (V0A5J4)
In PDB		Escherichia coli
9C50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coliLarge ribosomal subunit protein uL3
10D50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coliLarge ribosomal subunit protein uL4
11E50S ribosomal protein L5polymer17720073.21UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coliLarge ribosomal subunit protein uL5
12F50S ribosomal protein L6polymer17518672.41UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coliLarge ribosomal subunit protein uL6
13G50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coliLarge ribosomal subunit protein bL9
14H50S ribosomal protein L10polymer13013981.11UniProt (P0A7J3)
Pfam (PF00466)
In PDB		Escherichia coli50S ribosomal protein L8,Large ribosomal subunit protein uL10
15I50S ribosomal protein L11polymer13514090.41UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coliLarge ribosomal subunit protein uL11
16J50S ribosomal protein L13polymer14115919.41UniProt (A0A379XJZ2)
Pfam (PF00572)
In PDB		Escherichia coli
17K50S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coliLarge ribosomal subunit protein uL14
18L50S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coliLarge ribosomal subunit protein uL15
19M50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coliLarge ribosomal subunit protein uL16
20N50S ribosomal protein L17polymer11913592.81UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coliLarge ribosomal subunit protein bL17
21O50S ribosomal protein L18polymer11512548.41UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coliLarge ribosomal subunit protein uL18
22P50S ribosomal protein L19polymer11413028.11UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coliLarge ribosomal subunit protein bL19
23Q50S ribosomal protein L20polymer11713396.81UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coliLarge ribosomal subunit protein bL20
24R50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coliLarge ribosomal subunit protein bL21
25S50S ribosomal protein L22polymer10811993.11UniProt (D7X2Z6)
In PDB		Escherichia coli
26T50S ribosomal protein L23polymer9410661.61UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coliLarge ribosomal subunit protein uL23
27U50S ribosomal protein L24polymer10311208.11UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coliLarge ribosomal subunit protein uL24
28V50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coliLarge ribosomal subunit protein bL25
29W50S ribosomal protein L27polymer768275.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coliLarge ribosomal subunit protein bL27
30X50S ribosomal protein L28polymer778896.41UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coliLarge ribosomal subunit protein bL28
31Y50S ribosomal protein L29polymer586826.91UniProt (E3PKZ6)
In PDB		Escherichia coli
32Z50S ribosomal protein L30polymer566223.41UniProt (A0A0E0XV41)
Pfam (PF00327)
In PDB		Escherichia coli
33a50S ribosomal protein L31polymer667516.71UniProt (P0A7M9)
Pfam (PF01197)
In PDB		Escherichia coliLarge ribosomal subunit protein bL31-A
34b50S ribosomal protein L32polymer546132.01UniProt (D7XAL4)
In PDB		Escherichia coli
35c50S ribosomal protein L33polymer526057.21UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coliLarge ribosomal subunit protein bL33
36d50S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coliLarge ribosomal subunit protein bL34
37e50S ribosomal protein L35polymer647181.81UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coliLarge ribosomal subunit protein bL35,Ribosomal protein A
38f50S ribosomal protein L36polymer374320.31Escherichia coli
39g30S ribosomal protein S2polymer22525072.91UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coliSmall ribosomal subunit protein uS2
40h30S ribosomal protein S3polymer20823249.01UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coliSmall ribosomal subunit protein uS3
41i30S ribosomal protein S4polymer20523383.01UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coliSmall ribosomal subunit protein uS4
42j30S ribosomal protein S5polymer15616475.01UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coliSmall ribosomal subunit protein uS5
43k30S ribosomal protein S6polymer10412126.01UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coliSmall ribosomal subunit protein bS6
44l30S ribosomal protein S7polymer15116861.51UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coliSmall ribosomal subunit protein uS7
45m30S ribosomal protein S8polymer12914015.41UniProt (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coliSmall ribosomal subunit protein uS8
46n30S ribosomal protein S9polymer12614397.71UniProt (A0A029HJ91)
In PDB		Escherichia coli
47o30S ribosomal protein S10polymer9911254.01UniProt (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coliSmall ribosomal subunit protein uS10
48p30S ribosomal protein S11polymer11712487.21UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coliSmall ribosomal subunit protein uS11
49q30S ribosomal protein S12polymer12313683.11UniProt (F5NAB8)
In PDB		Escherichia coli
50r30S ribosomal protein S13polymer11512738.91UniProt (H4IXV7)
In PDB		Escherichia coli
51s30S ribosomal protein S14polymer10011475.41UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coliSmall ribosomal subunit protein uS14
52t30S ribosomal protein S15polymer8710072.51UniProt (P0ADZ4)
Pfam (PF00312)
In PDB		Escherichia coliSmall ribosomal subunit protein uS15
53u30S ribosomal protein S16polymer819136.51UniProt (S0UHH0)
In PDB		Escherichia coli
54v30S ribosomal protein S17polymer809263.91UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coliSmall ribosomal subunit protein uS17
55w30S ribosomal protein S18polymer657606.81UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coliSmall ribosomal subunit protein bS18
56x30S ribosomal protein S19polymer829349.91UniProt (U9ZUL7)
In PDB		Escherichia coli
57y30S ribosomal protein S20polymer859506.21UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coliSmall ribosomal subunit protein bS20
58z30S ribosomal protein S21polymer708392.81UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coliSmall ribosomal subunit protein bS21
594transfer-messenger RNA (tmRNA)polymer363117214.31Escherichia coli
607tRNA-Valpolymer7724823.71Escherichia coli
611, 2, X, y, 7...MAGNESIUM IONnon-polymer24.3439Chemie (MG)
62a, fZINC IONnon-polymer65.42Chemie (ZN)
63waterwater18.02Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains60
Total formula weight2327534.4
Non-Polymers*Number of molecules441
Total formula weight10800.7
All*Total formula weight2338335.1
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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