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6Q95

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1216S RIBOSOMAL RNApolymer1522493958.31GenBank (55771382)Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
2g30S ribosomal protein S2polymer23527116.41UniProt (P80371)
Pfam (PF00318)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
3h30S ribosomal protein S3polymer20722975.61UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
4i30S ribosomal protein S4polymer20824242.31UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
5j30S ribosomal protein S5polymer15116460.21UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
6k30S ribosomal protein S6polymer10111988.81UniProt (Q5SLP8)
Pfam (PF01250)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)TS9
7l30S ribosomal protein S7polymer15517919.81UniProt (P17291)
Pfam (PF00177)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
8m30S ribosomal protein S8polymer13815868.61UniProt (P0DOY9)
Pfam (PF00410)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
9n30S ribosomal protein S9polymer12714298.51UniProt (P80374)
Pfam (PF00380)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
10o30S ribosomal protein S10polymer9911398.31UniProt (Q5SHN7)
Pfam (PF00338)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
11p30S ribosomal protein S11polymer11912606.41UniProt (P80376)
Pfam (PF00411)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
12q30S ribosomal protein S12polymer12513875.41UniProt (Q5SHN3)
Pfam (PF00164)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
13r30S ribosomal protein S13polymer12013623.91UniProt (P80377)
Pfam (PF00416)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
14s30S ribosomal protein S14 type Zpolymer607027.51UniProt (P0DOY6)
Pfam (PF00253)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
15t30S ribosomal protein S15polymer8810447.21UniProt (Q5SJ76)
Pfam (PF00312)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
16u30S ribosomal protein S16polymer849995.51UniProt (Q5SJH3)
Pfam (PF00886)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
17v30S ribosomal protein S17polymer10011880.11UniProt (P0DOY7)
Pfam (PF00366)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
18w30S ribosomal protein S18polymer708155.81UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
19x30S ribosomal protein S19polymer799006.51UniProt (Q5SHP2)
Pfam (PF00203)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
20y30S ribosomal protein S20polymer9910921.11UniProt (P80380)
Pfam (PF01649)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
21z30S ribosomal protein Thxpolymer253089.71UniProt (Q5SIH3)
Pfam (PF17070)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)S31
227tRNA-fMetpolymer7724816.81Escherichia coli
238tRNA-Phepolymer7624400.41Escherichia coli
249mRNApolymer61853.11Escherichia coli
25W50S ribosomal protein L27polymer859529.11UniProt (P60493)
Pfam (PF01016)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
26X50S ribosomal protein L28polymer899985.81UniProt (P60494)
Pfam (PF00830)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
27Y50S ribosomal protein L29polymer516112.21UniProt (Q5SHP6)
Pfam (PF00831)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
28Z50S ribosomal protein L30polymer606799.11UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
29a50S ribosomal protein L31polymer586640.61UniProt (Q5SJE1)
Pfam (PF01197)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
30b50S ribosomal protein L32polymer596590.91UniProt (P80339)
Pfam (PF01783)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
31c50S ribosomal protein L33polymer455602.61UniProt (P35871)
Pfam (PF00471)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
32d50S ribosomal protein L34polymer496132.41UniProt (P80340)
Pfam (PF00468)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
33e50S ribosomal protein L35polymer647375.01UniProt (Q5SKU1)
Pfam (PF01632)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
34123S RIBOSOMAL RNApolymer2915947935.41Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
3535S RIBOSOMAL RNApolymer11938553.01GenBank (55771382)Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
36A50S ribosomal protein L1polymer22924872.71UniProt (Q5SLP7)
Pfam (PF00687)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
37B50S ribosomal protein L2polymer27229985.81UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
38C50S ribosomal protein L3polymer20522321.01UniProt (Q5SHN8)
Pfam (PF00297)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
39D50S ribosomal protein L4polymer20823071.71UniProt (Q5SHN9)
Pfam (PF00573)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)L1e
40E50S ribosomal protein L5polymer18120930.41UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
41F50S ribosomal protein L6polymer16017476.31UniProt (P0DOY8)
Pfam (PF00347)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
42G50S ribosomal protein L9polymer606536.71UniProt (Q5SLQ1)
Pfam (PF01281)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
43J50S ribosomal protein L13polymer13915828.81UniProt (P60488)
Pfam (PF00572)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
44K50S ribosomal protein L14polymer12213323.61UniProt (Q5SHP8)
Pfam (PF00238)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
45L50S ribosomal protein L15polymer14615858.51UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
46M50S ribosomal protein L16polymer13615364.01UniProt (P60489)
Pfam (PF00252)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
47N50S ribosomal protein L17polymer11713619.01UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
48O50S ribosomal protein L18polymer9910998.91UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)TL24
49P50S ribosomal protein L19polymer13816289.91UniProt (P60490)
Pfam (PF01245)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
50Q50S ribosomal protein L20polymer11713648.11UniProt (P60491)
Pfam (PF00453)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
51R50S ribosomal protein L21polymer10111069.21UniProt (P60492)
Pfam (PF00829)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
52S50S ribosomal protein L22polymer11312808.11UniProt (Q5SHP3)
Pfam (PF00237)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
53T50S ribosomal protein L23polymer9310386.31UniProt (Q5SHP0)
Pfam (PF00276)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
54U50S ribosomal protein L24polymer10111181.71UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
55V50S ribosomal protein L25polymer9210954.61UniProt (Q5SHZ1)
Pfam (PF01386)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)TL5
565SsrA-binding proteinpolymer14416785.51UniProt (Q8RR57)
Pfam (PF01668)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Small protein B
576Nascent peptide MET-ALApolymer2220.31Escherichia coli
58f50S ribosomal protein L36polymer374435.41UniProt (Q72I28)
Pfam (PF00444)
UniProt (by SIFTS) (Q5SHR2)
In PDB
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
59H, I50S RIBOSOMAL PROTEIN L10 AND L11polymer14011932.72Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
604transfer-messenger RNA (tmRNA)polymer349112818.91Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
612, 7, 1, 3, 8...MAGNESIUM IONnon-polymer24.3637Chemie (MG)
62i, s, fZINC IONnon-polymer65.43Chemie (ZN)
Sequence modifications
n: 2 - 128 (UniProt: P80374)
PDBExternal DatabaseDetails
Arg 58His 58conflict
G: 1 - 146 (UniProt: Q5SLQ1)
PDBExternal DatabaseDetails
Ala 146Glu 60conflict
V: 3 - 179 (UniProt: Q5SHZ1)
PDBExternal DatabaseDetails
Asp 179Glu 94conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains61
Total formula weight2343833.1
Non-Polymers*Number of molecules640
Total formula weight15678.5
All*Total formula weight2359511.6
*Water molecules are not included.

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PDB entries from 2024-07-17

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