Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6P5N

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1528S rRNApolymer35941164741.91Oryctolagus cuniculus (Rabbit)
275S rRNApolymer11938385.81Oryctolagus cuniculus (Rabbit)
385.8S rRNApolymer15650143.61Oryctolagus cuniculus (Rabbit)
4AAuL2polymer25728088.91UniProt (G1TT27)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Oryctolagus cuniculus (Rabbit)
5ABuL3polymer40245976.81UniProt (G1TL06)
Pfam (PF00297)
In PDB
Oryctolagus cuniculus (Rabbit)
6ACuL4polymer39244232.21UniProt (G1SVW5)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Oryctolagus cuniculus (Rabbit)
7ADuL18polymer29734479.81UniProt (G1SYJ6)
UniProt (by SIFTS) (P19949)
In PDB
Oryctolagus cuniculus (Rabbit)
8AEeL6polymer29133028.31UniProt (G1SKF7)
Pfam (PF03868)
Pfam (PF01159)
In PDB
Oryctolagus cuniculus (Rabbit)
9AFL30polymer24929514.31UniProt (G1SV32)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Oryctolagus cuniculus (Rabbit)
10AGeL8polymer24227655.81UniProt (G1STW0)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (Rabbit)
11AHuL6polymer19221871.41UniProt (G1TX33)
Pfam (PF00347)
UniProt (by SIFTS) (G1SWI6)
In PDB
Oryctolagus cuniculus (Rabbit)
12AIuL16polymer21424643.11UniProt (B7NZQ2)
Pfam (PF00252)
In PDB
Oryctolagus cuniculus (Rabbit)
13AJuL11polymer17820288.51UniProt (G1TUB8)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Oryctolagus cuniculus (Rabbit)
14ALeL13polymer21124331.71Oryctolagus cuniculus (Rabbit)
15AML14epolymer19821950.31UniProt (U3KNW6)
Pfam (PF01929)
UniProt (by SIFTS) (G1SZ12)
In PDB
Oryctolagus cuniculus (Rabbit)
16ANeL15polymer20424207.31UniProt (G1T0C1)
Pfam (PF00827)
In PDB
Oryctolagus cuniculus (Rabbit)
17AOuL13polymer20323547.31Oryctolagus cuniculus (Rabbit)
18APuL22polymer18421444.21UniProt (G1TVT6)
Pfam (PF00237)
UniProt (by SIFTS) (G1SCJ6)
In PDB
Oryctolagus cuniculus (Rabbit)
19AQeL18polymer18821821.71Oryctolagus cuniculus (Rabbit)
20AReL19polymer19623480.21UniProt (G1TJR3)
Pfam (PF01280)
In PDB
Oryctolagus cuniculus (Rabbit)
21ASeL20polymer17620743.41Oryctolagus cuniculus (Rabbit)
22ATeL21polymer16018610.01UniProt (G1SHQ2)
Pfam (PF01157)
In PDB
Oryctolagus cuniculus (Rabbit)
23AUeL22polymer12814936.11UniProt (G1TSG1)
Pfam (PF01776)
In PDB
Oryctolagus cuniculus (Rabbit)
24AVuL14polymer14014892.51UniProt (G1T6D1)
Pfam (PF00238)
In PDB
Oryctolagus cuniculus (Rabbit)
25AWeL24polymer15717825.11UniProt (G1SE28)
Pfam (PF01246)
In PDB
Oryctolagus cuniculus (Rabbit)
26AXeL23polymer15617768.21UniProt (G1SE76)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Oryctolagus cuniculus (Rabbit)
27AYuL24polymer14517303.41UniProt (G1SQH0)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Oryctolagus cuniculus (Rabbit)
28AZeL27polymer13615835.81UniProt (G1TXF6)
Pfam (PF00467)
Pfam (PF01777)
In PDB
Oryctolagus cuniculus (Rabbit)
29AauL15polymer14816617.51UniProt (G1SNY0)
Pfam (PF00828)
In PDB
Oryctolagus cuniculus (Rabbit)
30AbeL29polymer22624931.61UniProt (G1SGR6)
Pfam (PF01779)
In PDB
Oryctolagus cuniculus (Rabbit)
31AceL30polymer11512807.11UniProt (G1TDL2)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (Rabbit)
32AdeL31polymer12514494.91UniProt (G1SHG0)
Pfam (PF01198)
In PDB
Oryctolagus cuniculus (Rabbit)
33AeeL32polymer13515898.91UniProt (G1U437)
Pfam (PF01655)
UniProt (by SIFTS) (G1TUN8)
In PDB
Oryctolagus cuniculus (Rabbit)
34AfeL33polymer11012580.81UniProt (G1SF08)
Pfam (PF01247)
In PDB
Oryctolagus cuniculus (Rabbit)
35AgeL34polymer12614210.11UniProt (G1U945)
Pfam (PF01199)
UniProt (by SIFTS) (G1TXG5)
In PDB
Oryctolagus cuniculus (Rabbit)
36AheL35polymer12314566.61UniProt (G1SIT5)
Pfam (PF00831)
In PDB
Oryctolagus cuniculus (Rabbit)
37AieL36polymer10512263.81UniProt (G1TTQ5)
Pfam (PF01158)
In PDB
Oryctolagus cuniculus (Rabbit)
38AjeL37polymer9711111.01UniProt (U3KPD5)
Pfam (PF01907)
In PDB
Oryctolagus cuniculus (Rabbit)
39AkeL38polymer708272.01Oryctolagus cuniculus (Rabbit)
40AleL39polymer516455.81UniProt (G1TTN1)
Pfam (PF00832)
In PDB
Oryctolagus cuniculus (Rabbit)
41AmeL40polymer526199.61Oryctolagus cuniculus (Rabbit)
42AneL41polymer253473.51UniProt (A0A087WNH4)
Pfam (PF05162)
In PDB
Oryctolagus cuniculus (Rabbit)
43AoeL42polymer10612477.01UniProt (G1U344)
Pfam (PF00935)
UniProt (by SIFTS) (G1T040)
In PDB
Oryctolagus cuniculus (Rabbit)
44ApeL43polymer9210299.41UniProt (G1SY53)
Pfam (PF01780)
In PDB
Oryctolagus cuniculus (Rabbit)
45AreL28polymer13715783.61UniProt (G1U7L1)
Pfam (PF01778)
In PDB
Oryctolagus cuniculus (Rabbit)
46AKuL1polymer21724879.41UniProt (G1SKZ8)
Pfam (PF00687)
In PDB
Oryctolagus cuniculus (Rabbit)
47218S rRNApolymer1869602776.91Oryctolagus cuniculus (Rabbit)
48BuS2polymer29533003.11Oryctolagus cuniculus (Rabbit)
49CeS1polymer26430002.11UniProt (G1SS70)
Pfam (PF01015)
In PDB
Oryctolagus cuniculus (Rabbit)
50DuS5polymer25527485.21Oryctolagus cuniculus (Rabbit)
51EuS3polymer28131146.61UniProt (G1TNM3)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Oryctolagus cuniculus (Rabbit)
52FeS4polymer26329658.91UniProt (G1TK17)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB
Oryctolagus cuniculus (Rabbit)
53GuS7polymer20422913.51UniProt (G1TFM5)
Pfam (PF00177)
In PDB
Oryctolagus cuniculus (Rabbit)
54HeS6polymer24928751.91UniProt (G1TM55)
Pfam (PF01092)
In PDB
Oryctolagus cuniculus (Rabbit)
55IeS7polymer19422168.91UniProt (G1SVB0)
In PDB
Oryctolagus cuniculus (Rabbit)
56JeS8polymer20724134.21Oryctolagus cuniculus (Rabbit)
57KuS4polymer19422641.61UniProt (B7NZS8)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Oryctolagus cuniculus (Rabbit)
58LeS10polymer14917156.91UniProt (G1TPV3)
Pfam (PF03501)
In PDB
Oryctolagus cuniculus (Rabbit)
59MuS17polymer15818468.81UniProt (G1TRM4)
Pfam (PF16205)
Pfam (PF00366)
In PDB
Oryctolagus cuniculus (Rabbit)
60NeS12polymer13214539.01UniProt (G1SFR8)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (Rabbit)
61OuS15polymer15117259.41UniProt (G1SP51)
Pfam (PF08069)
Pfam (PF00312)
In PDB
Oryctolagus cuniculus (Rabbit)
62PuS11polymer15116302.81UniProt (G1U472)
Pfam (PF00411)
UniProt (by SIFTS) (G1T1F0)
In PDB
Oryctolagus cuniculus (Rabbit)
63QuS19polymer14517049.21UniProt (G1U0Q2)
Pfam (PF00203)
In PDB
Oryctolagus cuniculus (Rabbit)
64RuS9polymer17219213.51UniProt (G1SGX4)
Pfam (PF00380)
In PDB
Oryctolagus cuniculus (Rabbit)
65SeS17polymer13515552.11UniProt (G1TU13)
Pfam (PF00833)
In PDB
Oryctolagus cuniculus (Rabbit)
66TuS13polymer15217759.81UniProt (G1TPG3)
Pfam (PF00416)
In PDB
Oryctolagus cuniculus (Rabbit)
67UeS19polymer14516235.81UniProt (G1TN62)
Pfam (PF01090)
In PDB
Oryctolagus cuniculus (Rabbit)
68VuS10polymer11913398.81UniProt (G1SIZ2)
Pfam (PF00338)
In PDB
Oryctolagus cuniculus (Rabbit)
69WeS21polymer839043.31UniProt (G1TM82)
Pfam (PF01249)
In PDB
Oryctolagus cuniculus (Rabbit)
70XuS8polymer13014865.61UniProt (G1TG89)
Pfam (PF00410)
In PDB
Oryctolagus cuniculus (Rabbit)
71YuS12polymer14315784.51UniProt (G1SZ47)
Pfam (PF00164)
In PDB
Oryctolagus cuniculus (Rabbit)
72ZeS24polymer13415548.41UniProt (G1T3D8)
Pfam (PF01282)
In PDB
Oryctolagus cuniculus (Rabbit)
73aeS25polymer12513776.21UniProt (G1TDB3)
Pfam (PF03297)
In PDB
Oryctolagus cuniculus (Rabbit)
74beS26polymer11512961.51UniProt (G1TFE8)
Pfam (PF01283)
In PDB
Oryctolagus cuniculus (Rabbit)
75ceS27polymer849480.21UniProt (G1TZ76)
Pfam (PF01667)
In PDB
Oryctolagus cuniculus (Rabbit)
76deS28polymer697855.11UniProt (G1TIB4)
Pfam (PF01200)
In PDB
Oryctolagus cuniculus (Rabbit)
77eeS29polymer566690.81UniProt (G1U7M4)
Pfam (PF00253)
In PDB
Oryctolagus cuniculus (Rabbit)
78feS30polymer13314498.91UniProt (G1T8A2)
Pfam (PF00240)
Pfam (PF04758)
In PDB
Oryctolagus cuniculus (Rabbit)
79geS31polymer15618004.01UniProt (G1SK22)
Pfam (PF00240)
Pfam (PF01599)
In PDB
Oryctolagus cuniculus (Rabbit)
80hRACK1polymer31735115.71UniProt (G1SJB4)
Pfam (PF00400)
In PDB
Oryctolagus cuniculus (Rabbit)
81AqEukaryotic peptide chain release factor subunit 1polymer43749092.71Homo sapiens (Human)
821IAPV-IRESpolymer25180866.71Israeli acute paralysis virus
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains82
Total formula weight3460272.5
All*Total formula weight3460272.5
*Water molecules are not included.

221716

PDB entries from 2024-06-26

PDB statisticsPDBj update infoContact PDBjnumon