6OPP
Asymmetric model of CD4- and 17-bound B41 HIV-1 Env SOSIP in complex with DDM
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | L, I, O | 17b Fab light chain | polymer | 214 | 23425.9 | 3 | Homo sapiens (Human) | ||
2 | B, E, K | Envelope glycoprotein gp41 | polymer | 153 | 17357.8 | 3 | UniProt (B3UEZ6) Pfam (PF00517) In PDB | Human immunodeficiency virus 1 (HIV-1) | |
3 | A, D, J | Envelope glycoprotein gp160 | polymer | 524 | 58872.9 | 3 | UniProt (B3UES2) Pfam (PF00516) In PDB | Human immunodeficiency virus 1 | Env polyprotein |
4 | C, M, F | T-cell surface glycoprotein CD4 | polymer | 208 | 23039.2 | 3 | UniProt (P01730) Pfam (PF00047) Pfam (PF05790) In PDB | Homo sapiens (Human) | T-cell surface antigen T4/Leu-3 |
5 | H, G, N | 17b Fab heavy chain | polymer | 229 | 24484.5 | 3 | Homo sapiens (Human) | ||
6 | a, b, e, f, h... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 16 | In PDB GlyTouCan (G42666HT) | |||
7 | d, i, j, Q, S... | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 10 | In PDB GlyTouCan (G15407YE) | |||
8 | c, R | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1235.1 | 2 | In PDB GlyTouCan (G46836GH) | |||
9 | g, r, V | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 3 | In PDB GlyTouCan (G81315DD) | |||
10 | n | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 1 | In PDB GlyTouCan (G56014GC) | |||
11 | o | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G22573RC) | |||
12 | B, E | DODECYL-BETA-D-MALTOSIDE | non-polymer | 510.6 | 3 | Chemie (LMT) | |||
13 | B, A, D, E, K... | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 24 | Chemie (NAG) |
Sequence modifications
B, E, K: 512 - 664 (UniProt: B3UEZ6)
A, D, J: 31 - 513 (UniProt: B3UES2)
C, M, F: 0 - 178 (UniProt: P01730)
PDB | External Database | Details |
---|---|---|
Pro 559 | Ile 563 | engineered mutation |
Cys 605 | Thr 609 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Met -4 | - | initiating methionine |
Asp -3 | - | expression tag |
Ala -2 | - | expression tag |
Met -1 | - | expression tag |
Lys 0 | - | expression tag |
Arg 1 | - | expression tag |
Gly 2 | - | expression tag |
Leu 3 | - | expression tag |
Cys 4 | - | expression tag |
Cys 5 | - | expression tag |
Val 6 | - | expression tag |
Leu 7 | - | expression tag |
Leu 8 | - | expression tag |
Leu 9 | - | expression tag |
Cys 10 | - | expression tag |
Gly 11 | - | expression tag |
Ala 12 | - | expression tag |
Val 13 | - | expression tag |
Phe 14 | - | expression tag |
Val 15 | - | expression tag |
Ser 16 | - | expression tag |
Pro 17 | - | expression tag |
Ser 18 | - | expression tag |
Gln 19 | - | expression tag |
Glu 20 | - | expression tag |
Ile 21 | - | expression tag |
His 22 | - | expression tag |
Ala 23 | - | expression tag |
Arg 24 | - | expression tag |
Phe 25 | - | expression tag |
Arg 26 | - | expression tag |
Arg 27 | - | expression tag |
Gly 28 | - | expression tag |
Ala 29 | - | expression tag |
Arg 30 | - | expression tag |
Cys 501 | Ala 505 | engineered mutation |
Arg 509 | Glu 513 | engineered mutation |
Arg 510 | Lys 514 | engineered mutation |
Arg 512 | Ala 516 | engineered mutation |
Arg 513 | Val 517 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Met -19 | - | initiating methionine |
Glu -18 | - | expression tag |
Thr -17 | - | expression tag |
Asp -16 | - | expression tag |
Thr -15 | - | expression tag |
Leu -14 | - | expression tag |
Leu -13 | - | expression tag |
Leu -12 | - | expression tag |
Trp -11 | - | expression tag |
Val -10 | - | expression tag |
Leu -9 | - | expression tag |
Leu -8 | - | expression tag |
Leu -7 | - | expression tag |
Trp -6 | - | expression tag |
Val -5 | - | expression tag |
Pro -4 | - | expression tag |
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
Thr -1 | - | expression tag |
Gly 179 | - | expression tag |
Gly 180 | - | expression tag |
Ser 181 | - | expression tag |
Gly 182 | - | expression tag |
His 183 | - | expression tag |
His 184 | - | expression tag |
His 185 | - | expression tag |
His 186 | - | expression tag |
His 187 | - | expression tag |
His 188 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 15 |
Total formula weight | 441540.7 | |
Branched | Number of molecules | 33 |
Total formula weight | 19193.7 | |
Non-Polymers* | Number of molecules | 27 |
Total formula weight | 6840.8 | |
All* | Total formula weight | 467575.2 |