6OOV
Crystal structure of HMCES SRAP domain in complex with palindromic 3' overhang DNA
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein | polymer | 276 | 31671.6 | 2 | UniProt (Q96FZ2) Pfam (PF02586) In PDB | Homo sapiens (Human) | ES cell-specific 5hmC-binding protein,Putative peptidase SRAPD1,SRAP domain-containing protein 1 |
| 2 | C, D | DNA (5'-D(*CP*AP*AP*CP*GP*TP*TP*GP*TP*TP*TP*TP*T)-3') | polymer | 13 | 3947.6 | 2 | synthetic construct | ||
| 3 | A, B | UNKNOWN ATOM OR ION | non-polymer | 47 | Chemie (UNX) | ||||
| 4 | water | water | 18.0 | 82 | Chemie (HOH) |
Sequence modifications
A, B: 2 - 270 (UniProt: Q96FZ2)
| PDB | External Database | Details |
|---|---|---|
| Ala 271 | - | expression tag |
| Glu 272 | - | expression tag |
| Asn 273 | - | expression tag |
| Leu 274 | - | expression tag |
| Tyr 275 | - | expression tag |
| Phe 276 | - | expression tag |
| Gln 277 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 71238.4 | |
| Non-Polymers* | Number of molecules | 47 |
| Total formula weight | 0.0 | |
| All* | Total formula weight | 71238.4 |
