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6OO2

Vps4 with Cyclic Peptide Bound in the Central Pore

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D, E...
(A, B, C, D, E...)
Vacuolar protein sorting-associated protein 4polymer33737120.86UniProt (P52917)
Pfam (PF00004)
Pfam (PF17862)
Pfam (PF09336)
Saccharomyces cerevisiae (Baker's yeast)Vps4, DOA4-independent degradation protein 6, Protein END13, Vacuolar protein-targeting protein 10
2F
(G)
Designed Cyclic Peptidepolymer302660.01synthetic construct
3H, I, J, K, L...
(H, I, J, K, L...)
Vacuolar protein sorting-associated protein VTA1polymer515773.612UniProt (Q06263)
Pfam (PF18097)
Saccharomyces cerevisiae (Baker's yeast)VPS20-associated protein 1
4CA, EA, T, W, Z
(D, E, A, B, C)
ADENOSINE-5'-DIPHOSPHATEnon-polymer427.25Chemie (ADP)
5AA, U, X
(C, A, B)
BERYLLIUM TRIFLUORIDE IONnon-polymer66.03Chemie (BEF)
6BA, DA, V, Y
(C, D, A, B)
MAGNESIUM IONnon-polymer24.34Chemie (MG)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains19
Total formula weight294668.3
Non-Polymers*Number of molecules12
Total formula weight2431.2
All*Total formula weight297099.6
*Water molecules are not included.

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PDB entries from 2025-07-09

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