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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6OM6

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1123S ribosomal RNApolymer2904941804.61Escherichia coli
2216S ribosomal RNApolymer1534497406.01Escherichia coli
335S ribosomal RNApolymer12038790.11GenBank (1273279017)Escherichia coli
44mRNApolymer51609.01Escherichia coli
55tRNA(gly)polymer7624453.51Escherichia coli
6B50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliLarge ribosomal subunit protein uL2
7C50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coliLarge ribosomal subunit protein uL3
8D50S ribosomal protein L4polymer20122121.61UniProt (D7Z9F6)
Pfam (PF00573)
UniProt (by SIFTS) (P60723)
In PDB		Escherichia coli
9E50S ribosomal protein L5polymer17920333.61UniProt (D7Z9G7)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P62399)
In PDB		Escherichia coli
10F50S ribosomal protein L6polymer17718932.81UniProt (D7Z9H0)
Pfam (PF00347)
UniProt (by SIFTS) (P0AG55)
In PDB		Escherichia coli
11G50S ribosomal protein L9polymer14915789.01UniProt (D7ZI15)
Pfam (PF03948)
Pfam (PF01281)
UniProt (by SIFTS) (P0A7R1)
In PDB		Escherichia coli
12J50S ribosomal protein L13polymer14216050.61UniProt (D7ZET0)
Pfam (PF00572)
UniProt (by SIFTS) (P0AA10)
In PDB		Escherichia coli
13K50S ribosomal protein L14polymer12313565.11UniProt (D7Z9G5)
Pfam (PF00238)
UniProt (by SIFTS) (P0ADY3)
In PDB		Escherichia coli
14L50S ribosomal protein L15polymer14415008.51UniProt (A0A037Y8L6)
Pfam (PF00828)
UniProt (by SIFTS) (P02413)
In PDB		Escherichia coli
15M50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coliLarge ribosomal subunit protein uL16
16N50S ribosomal protein L17polymer12714393.71UniProt (A0A0A8UJP9)
Pfam (PF01196)
UniProt (by SIFTS) (P0AG44)
In PDB		Escherichia coli
17O50S ribosomal protein L18polymer11712794.71UniProt (D7Z9H1)
Pfam (PF00861)
UniProt (by SIFTS) (P0C018)
In PDB		Escherichia coli
18P50S ribosomal protein L19polymer11513159.31UniProt (D7ZKU3)
Pfam (PF01245)
UniProt (by SIFTS) (P0A7K6)
In PDB		Escherichia coli
19Q50S ribosomal protein L20polymer11813528.01UniProt (B7MAS6)
Pfam (PF00453)
UniProt (by SIFTS) (P0A7L3)
In PDB		Escherichia coli
20R50S ribosomal protein L21polymer10311586.41UniProt (D7ZEN7)
Pfam (PF00829)
UniProt (by SIFTS) (P0AG48)
In PDB		Escherichia coli
21S50S ribosomal protein L22polymer11012253.41UniProt (D7Z9G0)
Pfam (PF00237)
UniProt (by SIFTS) (P61175)
In PDB		Escherichia coli
22T50S ribosomal protein L23polymer10011222.21UniProt (D7X2Z9)
Pfam (PF00276)
UniProt (by SIFTS) (P0ADZ0)
In PDB		Escherichia coli
23U50S ribosomal protein L24polymer10411339.31UniProt (D7Z9G6)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (P60624)
In PDB		Escherichia coli
24V50S ribosomal protein L25polymer9410713.51UniProt (D7XH79)
Pfam (PF01386)
UniProt (by SIFTS) (P68919)
In PDB		Escherichia coli
25X50S ribosomal protein L28polymer789027.61UniProt (S0YB49)
Pfam (PF00830)
UniProt (by SIFTS) (P0A7M2)
In PDB		Escherichia coli
26Y50S ribosomal protein L29polymer637286.51UniProt (D7Z9G3)
Pfam (PF00831)
UniProt (by SIFTS) (P0A7M6)
In PDB		Escherichia coli
27Z50S ribosomal protein L30polymer596554.81UniProt (D7Z9H3)
Pfam (PF00327)
UniProt (by SIFTS) (P0AG51)
In PDB		Escherichia coli
28a50S ribosomal protein L31polymer707887.11UniProt (D7ZFP6)
Pfam (PF01197)
UniProt (by SIFTS) (P0A7M9)
In PDB		Escherichia coli
29b50S ribosomal protein L32polymer576463.41UniProt (D7ZGG2)
Pfam (PF01783)
UniProt (by SIFTS) (P0A7N4)
In PDB		Escherichia coli
30c50S ribosomal protein L33polymer556388.61UniProt (D7Z9P0)
Pfam (PF00471)
UniProt (by SIFTS) (P0A7N9)
In PDB		Escherichia coli
31d50S ribosomal protein L34polymer465397.51UniProt (B7MGC4)
Pfam (PF00468)
UniProt (by SIFTS) (P0A7P5)
In PDB		Escherichia coli
32e50S ribosomal protein L35polymer657313.01UniProt (D7Z814)
Pfam (PF01632)
UniProt (by SIFTS) (P0A7Q1)
In PDB		Escherichia coli
33f50S ribosomal protein L36polymer384377.41UniProt (A0A0E2L017)
Pfam (PF00444)
UniProt (by SIFTS) (P0A7Q6)
In PDB		Escherichia coli
34g30S ribosomal protein S2polymer24126781.71UniProt (D7ZK99)
Pfam (PF00318)
UniProt (by SIFTS) (P0A7V0)
In PDB		Escherichia coli
35h30S ribosomal protein S3polymer23326031.31UniProt (B7MCS9)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P0A7V3)
In PDB		Escherichia coli
36i30S ribosomal protein S4polymer20623514.21UniProt (D7Z9H7)
Pfam (PF00163)
Pfam (PF01479)
UniProt (by SIFTS) (P0A7V8)
In PDB		Escherichia coli
37j30S ribosomal protein S5polymer16717629.41UniProt (D7Z9H2)
Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (P0A7W1)
In PDB		Escherichia coli
38k30S ribosomal protein S6polymer13515727.51UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coliSmall ribosomal subunit protein bS6
39l30S ribosomal protein S7polymer17920055.21UniProt (A0A2S5ZT99)
Pfam (PF00177)
UniProt (by SIFTS) (P02359)
In PDB		Escherichia coli
40m30S ribosomal protein S8polymer13014146.61UniProt (D7Z9G9)
Pfam (PF00410)
UniProt (by SIFTS) (P0A7W7)
In PDB		Escherichia coli
41n30S ribosomal protein S9polymer13014886.31UniProt (D7ZES9)
Pfam (PF00380)
UniProt (by SIFTS) (P0A7X3)
In PDB		Escherichia coli
42o30S ribosomal protein S10polymer10311755.61UniProt (D7Z9F4)
Pfam (PF00338)
UniProt (by SIFTS) (P0A7R5)
In PDB		Escherichia coli
43p30S ribosomal protein S11polymer12913871.01UniProt (B7MCR3)
Pfam (PF00411)
UniProt (by SIFTS) (P0A7R9)
In PDB		Escherichia coli
44q30S ribosomal protein S12polymer12413814.21UniProt (L4V1L2)
Pfam (PF00164)
UniProt (by SIFTS) (P0A7S3)
In PDB		Escherichia coli
45r30S ribosomal protein S13polymer11813128.51UniProt (H4UQ02)
Pfam (PF00416)
UniProt (by SIFTS) (P0A7S9)
In PDB		Escherichia coli
46s30S ribosomal protein S14polymer10111606.61UniProt (D7Z9G8)
Pfam (PF00253)
UniProt (by SIFTS) (P0AG59)
In PDB		Escherichia coli
47t30S ribosomal protein S15polymer8910290.81UniProt (D7ZEL4)
Pfam (PF00312)
UniProt (by SIFTS) (P0ADZ4)
In PDB		Escherichia coli
48u30S ribosomal protein S16polymer829207.61UniProt (B7MIU7)
Pfam (PF00886)
UniProt (by SIFTS) (P0A7T3)
In PDB		Escherichia coli
49v30S ribosomal protein S17polymer849724.51UniProt (D7Z9G4)
Pfam (PF00366)
UniProt (by SIFTS) (P0AG63)
In PDB		Escherichia coli
50w30S ribosomal protein S18polymer759005.51UniProt (A0A0E2KXL3)
Pfam (PF01084)
UniProt (by SIFTS) (P0A7T7)
In PDB		Escherichia coli
51x30S ribosomal protein S19polymer9210455.41UniProt (D7Z9F9)
Pfam (PF00203)
UniProt (by SIFTS) (P0A7U3)
In PDB		Escherichia coli
52y30S ribosomal protein S20polymer879708.51UniProt (D7ZAS2)
Pfam (PF01649)
UniProt (by SIFTS) (P0A7U7)
In PDB		Escherichia coli
53z30S ribosomal protein S21polymer718524.01UniProt (A0A0E2L2J1)
Pfam (PF01165)
UniProt (by SIFTS) (P68679)
In PDB		Escherichia coli
54W50S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coliLarge ribosomal subunit protein bL27
5514-amino-N-[5-(4-ethynylphenyl)-1,3,4-oxadiazol-2-yl]benzamidenon-polymer304.31Chemie (KKL)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains54
Total formula weight2164074.6
Non-Polymers*Number of molecules1
Total formula weight304.3
All*Total formula weight2164378.9
*Water molecules are not included.

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PDB entries from 2024-07-10

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