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6OHP

Structure of compound 1 (halopemide) bound human Phospholipase D2 catalytic domain

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D
(A, B, C, D)
Phospholipase D2polymer64072926.84UniProt (O14939)
Pfam (PF00614)
Pfam (PF13091)
Homo sapiens (Human)hPLD2,Choline phosphatase 2,PLD1C,Phosphatidylcholine-hydrolyzing phospholipase D2
2E, J, O, P
(A, B, C, D)
N-{2-[4-(5-chloro-2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)piperidin-1-yl]ethyl}-4-fluorobenzamidenon-polymer416.94Chemie (MJV)
3F, K, L, M, N
(A, B)
SULFATE IONnon-polymer96.15Chemie (SO4)
4G, H, I
(A)
GLYCEROLnon-polymer92.13Chemie (GOL)
5Q, R, S, T
(A, B, C, D)
waterwater18.0245Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight291707.0
Non-Polymers*Number of molecules12
Total formula weight2424.1
All*Total formula weight294131.1
*Water molecules are not included.

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PDB entries from 2025-08-27

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