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6NM4

Crystal structure of SAM-bound PRDM9 in complex with MRK-740 inhibitor

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Histone-lysine N-methyltransferase PRDM9polymer19121802.42UniProt (Q9NQV7)
Pfam (PF21549)
Homo sapiens (Human)PR domain zinc finger protein 9, PR domain-containing protein 9
2C, H
(A, B)
ZINC IONnon-polymer65.42Chemie (ZN)
3D, I
(A, B)
S-ADENOSYLMETHIONINEnon-polymer398.42Chemie (SAM)
4E, J
(A, B)
4-[3-(3,5-dimethoxyphenyl)-1,2,4-oxadiazol-5-yl]-1-methyl-9-(2-methylpyridin-4-yl)-1,4,9-triazaspiro[5.5]undecanenon-polymer464.62Chemie (KS7)
5F, G, K
(A, B)
UNKNOWN ATOM OR IONnon-polymer3Chemie (UNX)
6L, M
(A, B)
waterwater18.023Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight43604.7
Non-Polymers*Number of molecules9
Total formula weight1856.8
All*Total formula weight45461.5
*Water molecules are not included.

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PDB entries from 2025-12-24

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