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6NM4

Crystal structure of SAM-bound PRDM9 in complex with MRK-740 inhibitor

Functional Information from GO Data
ChainGOidnamespacecontents
A0042054molecular_functionhistone methyltransferase activity
B0042054molecular_functionhistone methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS205
ACYS208
ACYS216
AHIS219

site_idAC2
Number of Residues10
Detailsbinding site for residue SAM A 402
ChainResidue
ATYR318
AVAL319
AASN320
ACYS321
AKS7403
AALA256
ALEU258
AGLY290
ATYR291
AARG317

site_idAC3
Number of Residues10
Detailsbinding site for residue KS7 A 403
ChainResidue
AGLY290
ASER292
ATRP293
ACYS321
AALA322
AASP324
ATRP356
ATYR361
ASAM402
AHOH507

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN B 401
ChainResidue
BCYS205
BCYS208
BCYS216
BHIS219

site_idAC5
Number of Residues11
Detailsbinding site for residue SAM B 402
ChainResidue
BALA256
BGLY257
BLEU258
BGLY290
BTYR291
BARG317
BTYR318
BVAL319
BASN320
BCYS321
BKS7403

site_idAC6
Number of Residues13
Detailsbinding site for residue KS7 B 403
ChainResidue
AASP214
ASER215
AALA217
AALA218
APRO221
BGLY290
BSER292
BTRP293
BALA322
BASP324
BASP325
BTRP356
BSAM402

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:24095733, ECO:0000269|Ref.10, ECO:0007744|PDB:4IJD, ECO:0007744|PDB:6NM4
ChainResidueDetails
ACYS205
ACYS208
ACYS216
AHIS219
BCYS205
BCYS208
BCYS216
BHIS219

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|Ref.10
ChainResidueDetails
AALA256
ATYR291
AASN320
BALA256
BTYR291
BASN320

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q96EQ9
ChainResidueDetails
AASN288
ATYR357
BASN288
BTYR357

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N6-methyllysine; alternate => ECO:0000250|UniProtKB:Q96EQ9
ChainResidueDetails
ALYS368
BLYS368

site_idSWS_FT_FI5
Number of Residues4
DetailsMOD_RES: N6-methyllysine => ECO:0000250|UniProtKB:Q96EQ9
ChainResidueDetails
ALYS372
ALYS374
BLYS372
BLYS374

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PDB entries from 2024-07-17

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