6NIL
cryoEM structure of the truncated HIV-1 Vif/CBFbeta/A3F complex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, D, G, J | DNA dC->dU-editing enzyme APOBEC-3F | polymer | 207 | 24433.3 | 4 | UniProt (Q8IUX4) Pfam (PF08210) In PDB | Homo sapiens (Human) | Apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3F,A3F |
2 | B, E, H, K | Core-binding factor subunit beta | polymer | 151 | 17851.0 | 4 | UniProt (Q13951) Pfam (PF02312) In PDB | Homo sapiens (Human) | CBF-beta,Polyomavirus enhancer-binding protein 2 beta subunit,PEBP2-beta,SL3-3 enhancer factor 1 subunit beta,SL3/AKV core-binding factor beta subunit |
3 | C, F, I, L | Virion infectivity factor | polymer | 138 | 16736.1 | 4 | UniProt (P12504) UniProt (A0A346ARH7) Pfam (PF00559) In PDB | Human immunodeficiency virus 1 (HIV-1) | Vif,SOR protein |
4 | A, D, G, J | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) |
Sequence modifications
A, D, G, J: 185 - 373 (UniProt: Q8IUX4)
C, F, I, L: 1 - 113 (UniProt: P12504)
C, F, I, L: 158 - 176 (UniProt: A0A346ARH7)
PDB | External Database | Details |
---|---|---|
Met 167 | - | initiating methionine |
Gly 168 | - | expression tag |
Ser 169 | - | expression tag |
Ser 170 | - | expression tag |
His 171 | - | expression tag |
His 172 | - | expression tag |
His 173 | - | expression tag |
His 174 | - | expression tag |
His 175 | - | expression tag |
His 176 | - | expression tag |
Ser 177 | - | expression tag |
Gln 178 | - | expression tag |
Asp 179 | - | expression tag |
Pro 180 | - | expression tag |
Asn 181 | - | expression tag |
Ser 182 | - | expression tag |
Met 183 | - | expression tag |
Gly 184 | - | expression tag |
Asp 196 | Tyr 196 | engineered mutation |
Gly 247 | His 247 | engineered mutation |
Arg 248 | Cys 248 | engineered mutation |
Lys 302 | Phe 302 | engineered mutation |
Lys 310 | Trp 310 | engineered mutation |
Ala 314 | Tyr 314 | engineered mutation |
Ala 315 | Gln 315 | engineered mutation |
Asp 355 | Lys 355 | engineered mutation |
Asp 358 | Lys 358 | engineered mutation |
Asp 363 | Phe 363 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Glu 114 | - | linker |
Ala 153 | - | linker |
Ser 154 | - | linker |
Glu 155 | - | linker |
Gly 156 | - | linker |
Ser 157 | - | linker |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 12 |
Total formula weight | 236081.7 | |
Non-Polymers* | Number of molecules | 4 |
Total formula weight | 261.6 | |
All* | Total formula weight | 236343.3 |