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6NE3

Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h bound at SHL-2

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E
(A, E)
Histone H3.2polymer13615435.12UniProt (P84233)
Pfam (PF00125)
Xenopus laevis (African clawed frog)Histone H3
2B, F
(B, F)
Histone H4polymer10311394.42UniProt (P62799)
Pfam (PF15511)
Xenopus laevis (African clawed frog)
3C, G
(C, G)
Histone H2A type 1polymer13014093.42UniProt (P06897)
Pfam (PF00125)
Pfam (PF16211)
Xenopus laevis (African clawed frog)
4D
(D)
Histone H2Bpolymer9911180.01UniProt (A0A1L8FQ56)
Pfam (PF00125)
UniProt (by SIFTS) (P02281)
Xenopus laevis (African clawed frog)
5H
(H)
Histone H2Bpolymer9310348.91UniProt (A0A1L8FQ56)
Pfam (PF00125)
UniProt (by SIFTS) (P02281)
Xenopus laevis (African clawed frog)
6I
(J)
DNA (156-MER)polymer15647936.51Xenopus laevis (African clawed frog)
7J
(I)
DNA (156-MER)polymer15648372.81Xenopus laevis (African clawed frog)
8K
(W)
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5polymer46754653.31UniProt (O60264)
Pfam (PF00176)
Pfam (PF00271)
Homo sapiens (Human)SWI/SNF-related matrix-associated actin-dependent regulator of chromatin A5,Sucrose nonfermenting protein 2 homolog,hSNF2H
9L
(W)
ADENOSINE-5'-DIPHOSPHATEnon-polymer427.21Chemie (ADP)
Sequence modifications
A, E: 0 - 135 (UniProt: P84233)
PDBExternal DatabaseDetails
Ala 102Gly 103engineered mutation
C, G: 0 - 129 (UniProt: P06897)
PDBExternal DatabaseDetails
Arg 99Gly 100engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains11
Total formula weight254337.5
Non-Polymers*Number of molecules1
Total formula weight427.2
All*Total formula weight254764.7
*Water molecules are not included.

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PDB entries from 2025-06-11

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