6NDG
RHODOCETIN IN COMPLEX WITH THE INTEGRIN ALPHA2-A DOMAIN WITH YTTRIUM BOUND
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, D, G, J, M... | Snaclec rhodocetin subunit gamma | polymer | 135 | 15741.5 | 6 | UniProt (D2YW39) Pfam (PF00059) In PDB | Calloselasma rhodostoma (Malayan pit viper) | |
2 | B, E, H, K, N... | Snaclec rhodocetin subunit delta | polymer | 124 | 14876.0 | 6 | UniProt (D2YW40) Pfam (PF00059) In PDB | Calloselasma rhodostoma (Malayan pit viper) | |
3 | C, F, I, L, O... | Integrin alpha-2 | polymer | 217 | 23737.7 | 6 | UniProt (P17301) Pfam (PF00092) In PDB | Homo sapiens (Human) | CD49 antigen-like family member B,Collagen receptor,Platelet membrane glycoprotein Ia,GPIa,VLA-2 subunit alpha |
4 | R, E, G, H, J... | SULFATE ION | non-polymer | 96.1 | 15 | Chemie (SO4) | |||
5 | F, I, L, O, C... | YTTRIUM ION | non-polymer | 88.9 | 6 | Chemie (Y1) | |||
6 | R, F, I, L, O... | SODIUM ION | non-polymer | 23.0 | 6 | Chemie (NA) | |||
7 | R, E, H, J, K... | CHLORIDE ION | non-polymer | 35.5 | 9 | Chemie (CL) | |||
8 | D | AMMONIUM ION | non-polymer | 18.0 | 1 | Chemie (NH4) | |||
9 | water | water | 18.0 | 7 | Chemie (HOH) |
Sequence modifications
C, F, I, L, O, R: 170 - 366 (UniProt: P17301)
PDB | External Database | Details |
---|---|---|
Met 150 | - | expression tag |
Gly 151 | - | expression tag |
Ser 152 | - | expression tag |
Ser 153 | - | expression tag |
His 154 | - | expression tag |
His 155 | - | expression tag |
His 156 | - | expression tag |
His 157 | - | expression tag |
His 158 | - | expression tag |
His 159 | - | expression tag |
Ser 160 | - | expression tag |
Ser 161 | - | expression tag |
Gly 162 | - | expression tag |
Leu 163 | - | expression tag |
Val 164 | - | expression tag |
Pro 165 | - | expression tag |
Arg 166 | - | expression tag |
Gly 167 | - | expression tag |
Gly 168 | - | expression tag |
Ser 169 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 18 |
Total formula weight | 326131.4 | |
Non-Polymers* | Number of molecules | 37 |
Total formula weight | 2449.4 | |
All* | Total formula weight | 328580.8 |