6NDG
RHODOCETIN IN COMPLEX WITH THE INTEGRIN ALPHA2-A DOMAIN WITH YTTRIUM BOUND
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005576 | cellular_component | extracellular region |
| A | 0035821 | biological_process | modulation of process of another organism |
| A | 0090729 | molecular_function | toxin activity |
| B | 0005576 | cellular_component | extracellular region |
| B | 0035821 | biological_process | modulation of process of another organism |
| B | 0090729 | molecular_function | toxin activity |
| D | 0005576 | cellular_component | extracellular region |
| D | 0035821 | biological_process | modulation of process of another organism |
| D | 0090729 | molecular_function | toxin activity |
| E | 0005576 | cellular_component | extracellular region |
| E | 0035821 | biological_process | modulation of process of another organism |
| E | 0090729 | molecular_function | toxin activity |
| G | 0005576 | cellular_component | extracellular region |
| G | 0035821 | biological_process | modulation of process of another organism |
| G | 0090729 | molecular_function | toxin activity |
| H | 0005576 | cellular_component | extracellular region |
| H | 0035821 | biological_process | modulation of process of another organism |
| H | 0090729 | molecular_function | toxin activity |
| J | 0005576 | cellular_component | extracellular region |
| J | 0035821 | biological_process | modulation of process of another organism |
| J | 0090729 | molecular_function | toxin activity |
| K | 0005576 | cellular_component | extracellular region |
| K | 0035821 | biological_process | modulation of process of another organism |
| K | 0090729 | molecular_function | toxin activity |
| M | 0005576 | cellular_component | extracellular region |
| M | 0035821 | biological_process | modulation of process of another organism |
| M | 0090729 | molecular_function | toxin activity |
| N | 0005576 | cellular_component | extracellular region |
| N | 0035821 | biological_process | modulation of process of another organism |
| N | 0090729 | molecular_function | toxin activity |
| P | 0005576 | cellular_component | extracellular region |
| P | 0035821 | biological_process | modulation of process of another organism |
| P | 0090729 | molecular_function | toxin activity |
| Q | 0005576 | cellular_component | extracellular region |
| Q | 0035821 | biological_process | modulation of process of another organism |
| Q | 0090729 | molecular_function | toxin activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 201 |
| Chain | Residue |
| A | PHE19 |
| A | ASN20 |
| A | GLU21 |
| site_id | AC2 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 202 |
| Chain | Residue |
| A | ARG73 |
| A | ARG75 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 B 201 |
| Chain | Residue |
| C | THR250 |
| C | Y1401 |
| C | NA402 |
| B | ARG92 |
| B | LYS114 |
| C | SER184 |
| C | ASP248 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue Y1 C 401 |
| Chain | Residue |
| B | SO4201 |
| C | SER182 |
| C | SER184 |
| C | ASP283 |
| C | NA402 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | binding site for residue NA C 402 |
| Chain | Residue |
| B | SO4201 |
| C | SER184 |
| C | Y1401 |
| site_id | AC6 |
| Number of Residues | 2 |
| Details | binding site for residue CL C 403 |
| Chain | Residue |
| C | ARG260 |
| G | GLY7 |
| site_id | AC7 |
| Number of Residues | 2 |
| Details | binding site for residue CL C 404 |
| Chain | Residue |
| C | ARG339 |
| O | ARG339 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 D 201 |
| Chain | Residue |
| D | PHE19 |
| D | ASN20 |
| D | NH4202 |
| site_id | AC9 |
| Number of Residues | 3 |
| Details | binding site for residue NH4 D 202 |
| Chain | Residue |
| D | GLN17 |
| D | ALA18 |
| D | SO4201 |
| site_id | AD1 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 E 201 |
| Chain | Residue |
| E | LYS101 |
| E | ARG104 |
| site_id | AD2 |
| Number of Residues | 1 |
| Details | binding site for residue CL E 202 |
| Chain | Residue |
| E | LYS59 |
| site_id | AD3 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 E 203 |
| Chain | Residue |
| E | LYS114 |
| F | THR250 |
| F | Y1401 |
| F | NA402 |
| site_id | AD4 |
| Number of Residues | 6 |
| Details | binding site for residue Y1 F 401 |
| Chain | Residue |
| E | SO4203 |
| F | ASP180 |
| F | SER182 |
| F | SER184 |
| F | ASP283 |
| F | NA402 |
| site_id | AD5 |
| Number of Residues | 4 |
| Details | binding site for residue NA F 402 |
| Chain | Residue |
| E | SO4203 |
| F | SER182 |
| F | SER184 |
| F | Y1401 |
| site_id | AD6 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 G 201 |
| Chain | Residue |
| G | PHE19 |
| G | ASN20 |
| site_id | AD7 |
| Number of Residues | 1 |
| Details | binding site for residue CL H 201 |
| Chain | Residue |
| H | LYS59 |
| site_id | AD8 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 H 202 |
| Chain | Residue |
| H | LYS114 |
| I | THR250 |
| I | Y1401 |
| I | NA402 |
| site_id | AD9 |
| Number of Residues | 7 |
| Details | binding site for residue Y1 I 401 |
| Chain | Residue |
| H | SO4202 |
| I | ASP180 |
| I | SER182 |
| I | SER184 |
| I | THR250 |
| I | ASP283 |
| I | NA402 |
| site_id | AE1 |
| Number of Residues | 4 |
| Details | binding site for residue NA I 402 |
| Chain | Residue |
| H | SO4202 |
| I | SER182 |
| I | SER184 |
| I | Y1401 |
| site_id | AE2 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 J 201 |
| Chain | Residue |
| J | PHE19 |
| J | ASN20 |
| J | GLU21 |
| site_id | AE3 |
| Number of Residues | 1 |
| Details | binding site for residue CL J 202 |
| Chain | Residue |
| J | ARG73 |
| site_id | AE4 |
| Number of Residues | 1 |
| Details | binding site for residue CL K 201 |
| Chain | Residue |
| K | ARG14 |
| site_id | AE5 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 K 202 |
| Chain | Residue |
| K | ARG92 |
| K | LYS114 |
| L | ASP248 |
| L | THR250 |
| L | Y1401 |
| L | NA402 |
| site_id | AE6 |
| Number of Residues | 5 |
| Details | binding site for residue Y1 L 401 |
| Chain | Residue |
| K | SO4202 |
| L | SER182 |
| L | SER184 |
| L | ASP283 |
| L | NA402 |
| site_id | AE7 |
| Number of Residues | 4 |
| Details | binding site for residue NA L 402 |
| Chain | Residue |
| K | SO4202 |
| L | SER182 |
| L | SER184 |
| L | Y1401 |
| site_id | AE8 |
| Number of Residues | 1 |
| Details | binding site for residue CL L 403 |
| Chain | Residue |
| L | ARG260 |
| site_id | AE9 |
| Number of Residues | 2 |
| Details | binding site for residue CL M 201 |
| Chain | Residue |
| M | GLN102 |
| N | ARG91 |
| site_id | AF1 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 N 201 |
| Chain | Residue |
| N | ARG92 |
| N | LYS114 |
| O | ASP248 |
| O | THR250 |
| O | Y1401 |
| O | NA402 |
| site_id | AF2 |
| Number of Residues | 6 |
| Details | binding site for residue Y1 O 401 |
| Chain | Residue |
| O | NA402 |
| N | SO4201 |
| O | SER182 |
| O | SER184 |
| O | THR250 |
| O | ASP283 |
| site_id | AF3 |
| Number of Residues | 3 |
| Details | binding site for residue NA O 402 |
| Chain | Residue |
| N | SO4201 |
| O | SER184 |
| O | Y1401 |
| site_id | AF4 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 O 403 |
| Chain | Residue |
| O | ARG260 |
| O | LYS261 |
| O | GLN298 |
| site_id | AF5 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 Q 201 |
| Chain | Residue |
| Q | TYR8 |
| Q | ASN9 |
| site_id | AF6 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 Q 202 |
| Chain | Residue |
| Q | ARG92 |
| Q | LYS114 |
| R | ASP248 |
| R | THR250 |
| R | Y1401 |
| R | NA404 |
| site_id | AF7 |
| Number of Residues | 6 |
| Details | binding site for residue Y1 R 401 |
| Chain | Residue |
| Q | SO4202 |
| R | SER182 |
| R | SER184 |
| R | THR250 |
| R | ASP283 |
| R | NA404 |
| site_id | AF8 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 R 402 |
| Chain | Residue |
| R | GLN257 |
| R | ARG260 |
| R | LYS261 |
| R | GLN298 |
| site_id | AF9 |
| Number of Residues | 4 |
| Details | binding site for residue NA R 404 |
| Chain | Residue |
| Q | SO4202 |
| R | SER182 |
| R | SER184 |
| R | Y1401 |
Functional Information from PROSITE/UniProt
| site_id | PS00615 |
| Number of Residues | 26 |
| Details | C_TYPE_LECTIN_1 C-type lectin domain signature. CAvmvvktdrif..WFNRGCektvs.FVC |
| Chain | Residue | Details |
| B | CYS95-CYS120 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 1392 |
| Details | Domain: {"description":"C-type lectin","evidences":[{"source":"PROSITE-ProRule","id":"PRU00040","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 6 |
| Details | Glycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"source":"PubMed","id":"16263699","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19159218","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19349973","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
