6N9F

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

This is a large structure.

Entity

Chain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, 2A23S Ribosomal RNApolymer2915948035.62
Thermus thermophilus
1B, 2B5S Ribosomal RNApolymer12139188.42
Thermus thermophilus
1D, 2D50S Ribosomal Protein L2polymer27630532.62
Thermus thermophilus
1E, 2E50S Ribosomal Protein L3polymer20622450.22
Thermus thermophilus
1F, 2F50S Ribosomal Protein L4polymer21023271.92
Thermus thermophilus
1G, 2G50S Ribosomal Protein L5polymer18221061.62
Thermus thermophilus
1H, 2H50S Ribosomal Protein L6polymer18019568.92
Thermus thermophilus
1I, 2I50S Ribosomal Protein L9polymer14816422.22
Thermus thermophilus
1N, 2N50S Ribosomal Protein L13polymer14015927.92
Thermus thermophilus
1O, 2O50S Ribosomal Protein L14polymer12213323.62
Thermus thermophilus
1P, 2P50S Ribosomal Protein L15polymer15016319.12
Thermus thermophilus
1Q, 2Q50S Ribosomal Protein L16polymer14115993.92
Thermus thermophilus
1R, 2R50S Ribosomal Protein L17polymer11813750.12
Thermus thermophilus
1S, 2S50S Ribosomal Protein L18polymer11212639.82
Thermus thermophilus
1T, 2T50S Ribosomal Protein L19polymer14617188.82
Thermus thermophilus
1U, 2U50S Ribosomal Protein L20polymer11813779.32
Thermus thermophilus
1V, 2V50S Ribosomal Protein L21polymer10111069.22
Thermus thermophilus
1W, 2W50S Ribosomal Protein L22polymer11312808.12
Thermus thermophilus
1X, 2X50S Ribosomal Protein L23polymer9610759.82
Thermus thermophilus
1Y, 2Y50S ribosomal protein L24polymer11012085.62
UniProt (Q56435)
Pfam (PF00467)
Pfam (PF17136)
Thermus thermophilus
1Z, 2Z50S ribosomal protein L25polymer20623238.62
UniProt (Q72IA7)
Pfam (PF01386)
Pfam (PF14693)
Thermus thermophilusGeneral stress protein CTC
10, 2050S ribosomal protein L27polymer859529.12
UniProt (P60493)
Pfam (PF01016)
Thermus thermophilus
11, 2150S ribosomal protein L28polymer9811004.22
UniProt (P60494)
Pfam (PF00830)
Thermus thermophilus
12, 2250S ribosomal protein L29polymer728670.32
UniProt (Q72I12)
Pfam (PF00831)
Thermus thermophilus
13, 2350S ribosomal protein L30polymer606799.12
UniProt (P74909)
Pfam (PF00327)
Thermus thermophilus
14, 2450S ribosomal protein L31polymer718300.52
UniProt (Q72JR0)
Pfam (PF01197)
Thermus thermophilus
15, 2550S ribosomal protein L32polymer606722.12
UniProt (P80339)
Pfam (PF01783)
Thermus thermophilus
16, 2650S ribosomal protein L33polymer546632.92
UniProt (Q72GW3)
Pfam (PF00471)
Thermus thermophilus
17, 2750S ribosomal protein L34polymer496132.42
UniProt (P80340)
Pfam (PF00468)
Thermus thermophilus
18, 2850S Ribosomal Protein L35polymer657506.22
Thermus thermophilus
19, 2950S Ribosomal Protein L36polymer374435.42
Thermus thermophilus
1a, 2a16S Ribosomal RNApolymer1521493864.62
Thermus thermophilus
1b, 2b30S Ribosomal Protein S2polymer25629317.72
Thermus thermophilus
1c, 2c30S Ribosomal Protein S3polymer23926751.12
Thermus thermophilus
1d, 2d30S Ribosomal Protein S4polymer20924373.42
Thermus thermophilus
1e, 2e30S Ribosomal Protein S5polymer16217583.42
Thermus thermophilus
1f, 2f30S Ribosomal Protein S6polymer10111988.82
Thermus thermophilus
1g, 2g30S Ribosomal Protein S7polymer15618051.02
Thermus thermophilus
1h, 2h30S Ribosomal Protein S8polymer13815868.62
Thermus thermophilus
1i, 2i30S ribosomal protein S9polymer12814410.62
UniProt (P80374)
Pfam (PF00380)
Thermus thermophilus
1j, 2j30S ribosomal protein S10polymer10511955.02
UniProt (P80375)
Pfam (PF00338)
Thermus thermophilus
1k, 2k30S ribosomal protein S11polymer12913737.92
UniProt (P62654)
Pfam (PF00411)
Thermus thermophilus
1l, 2l30S ribosomal protein S12polymer13214683.52
UniProt (P17293)
Pfam (PF00164)
Thermus thermophilus
1m, 2m30S ribosomal protein S13polymer12614338.92
UniProt (P62655)
Pfam (PF00416)
Thermus thermophilus
1n, 2n30S ribosomal protein S14 type Zpolymer617158.72
UniProt (P24320)
Pfam (PF00253)
Thermus thermophilus
1o, 2o30S ribosomal protein S15polymer8910578.42
UniProt (P80378)
Pfam (PF00312)
Thermus thermophilus
1p, 2p30S ribosomal protein S16polymer8810410.02
UniProt (P62238)
Pfam (PF00886)
Thermus thermophilus
1q, 2q30S ribosomal protein S17polymer10512325.72
UniProt (P0DOY7)
Pfam (PF00366)
Thermus thermophilus
1r, 2r30S ribosomal protein S18polymer8810258.32
UniProt (P62659)
Pfam (PF01084)
Thermus thermophilus
1s, 2s30S Ribosomal Protein S19polymer9310605.52
Thermus thermophilus
1t, 2t30S Ribosomal Protein S20polymer10611736.12
Thermus thermophilus
1u, 2u30S ribosomal protein Thxpolymer273350.02
UniProt (P62612)
Pfam (PF17070)
Thermus thermophilus
1v, 2vmRNApolymer247804.72
Enterobacteria phage T4
1w, 2wACCA-DPhepolymer41370.02
Escherichia coli
1x, 2xP-site tRNA, Deacylated Initiator Methionyl-tRNApolymer7724846.92
Escherichia coli
MAGNESIUM IONnon-polymer24.31339
ZINC IONnon-polymer65.412
IRON/SULFUR CLUSTERnon-polymer351.62
waterwater18.0247

Sequence viewer

Contents of the asymmetric unit

PolymersNumber of chains110
Total molecular weight4405032.2
Non-Polymers*Number of molecules1353
Total molecular weight34032.6
All*Total molecular weight4439064.8
*Water molecules are not included.
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