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6N1D

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, DB
(A16S, B16S)
16S rRNApolymer1518492773.72GenBank (46197919)Thermus thermophilus HB27
2B, EB
(A23S, B23S)
23S rRNApolymer2881937014.72Thermus thermophilus HB27
3C, FB
(A5S, B5S)
5s rRNApolymer11938553.02GenBank (46197919)Thermus thermophilus HB27
4D, HB
(AL01, BL01)
50S ribosomal protein L1polymer22824741.52UniProt (A0A1J1EJ43)
Pfam (PF00687)
UniProt (by SIFTS) (Q72GV9)
Thermus thermophilus
5E, IB
(AL02, BL02)
50S ribosomal protein L2polymer27630532.62UniProt (Q72I07)
Pfam (PF00181)
Pfam (PF03947)
Thermus thermophilus HB27
6F, JB
(AL03, BL03)
50S ribosomal protein L3polymer20622450.22UniProt (Q72I04)
Pfam (PF00297)
Thermus thermophilus HB27
7G, KB
(AL04, BL04)
50S ribosomal protein L4polymer20522744.32UniProt (Q72I05)
Pfam (PF00573)
Thermus thermophilus HB27
8H, LB
(AL05, BL05)
50S ribosomal protein L5polymer18120944.42UniProt (Q72I16)
Pfam (PF00281)
Pfam (PF00673)
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
9I, MB
(AL06, BL06)
50S ribosomal protein L6polymer18019568.92UniProt (Q72I19)
Pfam (PF00347)
Thermus thermophilus HB27
10J, NB
(AL09, BL09)
50S ribosomal protein L9polymer14816436.22UniProt (Q72GV5)
Pfam (PF01281)
Pfam (PF03948)
Thermus thermophilus HB27
11K, OB
(AL13, BL13)
50S ribosomal protein L13polymer14015927.92UniProt (Q72IN1)
Pfam (PF00572)
Thermus thermophilus HB27
12L, PB
(AL14, BL14)
50S ribosomal protein L14polymer12213309.62UniProt (Q72I14)
Pfam (PF00238)
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
13M, QB
(AL15, BL15)
50S ribosomal protein L15polymer15016319.12UniProt (Q72I23)
Pfam (PF00828)
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
14N, RB
(AL16, BL16)
50S ribosomal protein L16polymer14115977.92UniProt (Q72I11)
Pfam (PF00252)
Thermus thermophilus HB27
15O, SB
(AL17, BL17)
50S ribosomal protein L17polymer11813750.12UniProt (Q72I33)
Pfam (PF01196)
Thermus thermophilus HB27
16P, TB
(AL18, BL18)
50S ribosomal protein L18polymer11112508.62UniProt (Q72I20)
Pfam (PF00861)
Thermus thermophilus HB27
17Q, UB
(AL19, BL19)
50S ribosomal protein L19polymer14617217.92UniProt (Q72JU9)
Pfam (PF01245)
Thermus thermophilus HB27
18R, VB
(AL20, BL20)
50S ribosomal protein L20polymer11813779.32UniProt (Q72L76)
Pfam (PF00453)
Thermus thermophilus HB27
19S, WB
(AL21, BL21)
50S ribosomal protein L21polymer10111069.22UniProt (Q72HR2)
Pfam (PF00829)
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
20T, XB
(AL22, BL22)
50S ribosomal protein L22polymer11312808.12UniProt (Q72I09)
Pfam (PF00237)
Thermus thermophilus HB27
21U, YB
(AL23, BL23)
50S ribosomal protein L23polymer9610759.82UniProt (Q72I06)
Pfam (PF00276)
Thermus thermophilus HB27
22V, ZB
(AL24, BL24)
50S ribosomal protein L24polymer11012085.62UniProt (Q72I15)
Pfam (PF00467)
Pfam (PF17136)
Thermus thermophilus HB27
23AC, W
(AL25, BL25)
50S ribosomal protein L25polymer20623238.62UniProt (Q72IA7)
Pfam (PF01386)
Pfam (PF14693)
Thermus thermophilus HB27General stress protein CTC
24BC, X
(AL27, BL27)
50S ribosomal protein L27polymer849397.92UniProt (P60493)
Pfam (PF01016)
UniProt (by SIFTS) (Q72HR3)
Thermus thermophilus
25CC, Y
(AL28, BL28)
50S ribosomal protein L28polymer9811032.22UniProt (Q72G84)
Pfam (PF00830)
Thermus thermophilus HB27
26DC, Z
(AL29, BL29)
50S ribosomal protein L29polymer728670.32UniProt (Q72I12)
Pfam (PF00831)
Thermus thermophilus HB27
27AA, EC
(AL30, BL30)
50S ribosomal protein L30polymer606799.12UniProt (Q72I22)
Pfam (PF00327)
Thermus thermophilus HB27
28BA, FC
(AL31, BL31)
50S ribosomal protein L31polymer718300.52UniProt (Q72JR0)
Pfam (PF01197)
Thermus thermophilus HB27
29CA, GC
(AL32, BL32)
50S ribosomal protein L32polymer596590.92UniProt (P80339)
Pfam (PF01783)
UniProt (by SIFTS) (P62652)
Thermus thermophilus
30DA, HC
(AL33, BL33)
50S ribosomal protein L33polymer546632.92UniProt (Q72GW3)
Pfam (PF00471)
Thermus thermophilus HB27
31EA, IC
(AL34, BL34)
50S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
Thermus thermophilus
32FA, JC
(AL35, BL35)
50S ribosomal protein L35polymer647375.02UniProt (Q72L77)
Pfam (PF01632)
Thermus thermophilus HB27
33GA, KC
(AL36, BL36)
50S ribosomal protein L36polymer374435.42UniProt (Q72I28)
Pfam (PF00444)
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
34HA, LC
(AMRN, BMRN)
mRNApolymer175562.42synthetic construct
35IA, MC
(APTN, BPTN)
P-tRNApolymer7624616.82Escherichia coli
36JA, NC
(AS02, BS02)
30S ribosomal protein S2polymer25529186.52UniProt (P62662)
Pfam (PF00318)
Thermus thermophilus HB27
37KA, OC
(AS03, BS03)
30S ribosomal protein S3polymer23826619.92UniProt (P62663)
Pfam (PF07650)
Pfam (PF00189)
Thermus thermophilus HB27
38LA, PC
(AS04, BS04)
30S ribosomal protein S4polymer20824242.32UniProt (P62664)
Pfam (PF00163)
Pfam (PF01479)
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
39MA, QC
(AS05, BS05)
30S ribosomal protein S5polymer16117452.22UniProt (P62665)
Pfam (PF00333)
Pfam (PF03719)
Thermus thermophilus HB27
40NA, RC
(AS06, BS06)
30S ribosomal protein S6polymer10111988.82UniProt (P62666)
Pfam (PF01250)
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
41OA, SC
(AS07, BS07)
30S ribosomal protein S7polymer15517919.82UniProt (P62667)
Pfam (PF00177)
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
42PA, TC
(AS08, BS08)
30S ribosomal protein S8polymer13815868.62UniProt (P62668)
Pfam (PF00410)
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
43QA, UC
(AS09, BS09)
30S ribosomal protein S9polymer12814429.72UniProt (P62669)
Pfam (PF00380)
Thermus thermophilus HB27
44RA, VC
(AS10, BS10)
30S ribosomal protein S10polymer10411823.82UniProt (P62653)
Pfam (PF00338)
Thermus thermophilus HB27
45SA, WC
(AS11, BS11)
30S ribosomal protein S11polymer12813606.72UniProt (P62654)
Pfam (PF00411)
Thermus thermophilus HB27
46TA, XC
(AS12, BS12)
30S ribosomal protein S12polymer13114506.22UniProt (P61941)
Pfam (PF00164)
Thermus thermophilus HB27
47UA, YC
(AS13, BS13)
30S ribosomal protein S13polymer12514207.72UniProt (P62655)
Pfam (PF00416)
Thermus thermophilus HB27
48VA, ZC
(AS14, BS14)
30S ribosomal protein S14 type Zpolymer607027.52UniProt (P62656)
Pfam (PF00253)
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
49AD, WA
(AS15, BS15)
30S ribosomal protein S15polymer8810447.22UniProt (P62657)
Pfam (PF00312)
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
50BD, XA
(AS16, BS16)
30S ribosomal protein S16polymer8810410.02UniProt (P62238)
Pfam (PF00886)
Thermus thermophilus HB27
51CD, YA
(AS17, BS17)
30S ribosomal protein S17polymer10412193.52UniProt (P62658)
Pfam (PF00366)
Thermus thermophilus HB27
52DD, ZA
(AS18, BS18)
30S ribosomal protein S18polymer8710127.12UniProt (P62659)
Pfam (PF01084)
Thermus thermophilus HB27
53AB, ED
(AS19, BS19)
30S ribosomal protein S19polymer9210474.32UniProt (P62660)
Pfam (PF00203)
Thermus thermophilus HB27
54BB, FD
(AS20, BS20)
30S ribosomal protein S20polymer10511590.92UniProt (P62661)
Pfam (PF01649)
Thermus thermophilus HB27
55CB, GD
(ATHX, BTHX)
30S ribosomal protein Thxpolymer263218.82UniProt (P62613)
Pfam (PF17070)
Thermus thermophilus HB27
56GB
(BATN)
A tRNApolymer8527544.71Escherichia coli
57AE, AF, AG, AH, AI...
(A16S, A23S, AL21, B16S, B23S...)
MAGNESIUM IONnon-polymer24.3359Chemie (MG)
58AR, PI
(BS04, AS04)
IRON/SULFUR CLUSTERnon-polymer351.62Chemie (SF4)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains111
Total formula weight4442340.9
Non-Polymers*Number of molecules361
Total formula weight9428.8
All*Total formula weight4451769.7
*Water molecules are not included.

227111

PDB entries from 2024-11-06

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