6N1D
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, DB (A16S, B16S) | 16S rRNA | polymer | 1518 | 492773.7 | 2 | GenBank (46197919) | Thermus thermophilus HB27 | |
| 2 | B, EB (A23S, B23S) | 23S rRNA | polymer | 2881 | 937014.7 | 2 | Thermus thermophilus HB27 | ||
| 3 | C, FB (A5S, B5S) | 5s rRNA | polymer | 119 | 38553.0 | 2 | GenBank (46197919) | Thermus thermophilus HB27 | |
| 4 | D, HB (AL01, BL01) | 50S ribosomal protein L1 | polymer | 228 | 24741.5 | 2 | UniProt (A0A1J1EJ43) Pfam (PF00687) UniProt (by SIFTS) (Q72GV9) | Thermus thermophilus | |
| 5 | E, IB (AL02, BL02) | 50S ribosomal protein L2 | polymer | 276 | 30532.6 | 2 | UniProt (Q72I07) Pfam (PF00181) Pfam (PF03947) | Thermus thermophilus HB27 | |
| 6 | F, JB (AL03, BL03) | 50S ribosomal protein L3 | polymer | 206 | 22450.2 | 2 | UniProt (Q72I04) Pfam (PF00297) | Thermus thermophilus HB27 | |
| 7 | G, KB (AL04, BL04) | 50S ribosomal protein L4 | polymer | 205 | 22744.3 | 2 | UniProt (Q72I05) Pfam (PF00573) | Thermus thermophilus HB27 | |
| 8 | H, LB (AL05, BL05) | 50S ribosomal protein L5 | polymer | 181 | 20944.4 | 2 | UniProt (Q72I16) Pfam (PF00281) Pfam (PF00673) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 9 | I, MB (AL06, BL06) | 50S ribosomal protein L6 | polymer | 180 | 19568.9 | 2 | UniProt (Q72I19) Pfam (PF00347) | Thermus thermophilus HB27 | |
| 10 | J, NB (AL09, BL09) | 50S ribosomal protein L9 | polymer | 148 | 16436.2 | 2 | UniProt (Q72GV5) Pfam (PF01281) Pfam (PF03948) | Thermus thermophilus HB27 | |
| 11 | K, OB (AL13, BL13) | 50S ribosomal protein L13 | polymer | 140 | 15927.9 | 2 | UniProt (Q72IN1) Pfam (PF00572) | Thermus thermophilus HB27 | |
| 12 | L, PB (AL14, BL14) | 50S ribosomal protein L14 | polymer | 122 | 13309.6 | 2 | UniProt (Q72I14) Pfam (PF00238) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 13 | M, QB (AL15, BL15) | 50S ribosomal protein L15 | polymer | 150 | 16319.1 | 2 | UniProt (Q72I23) Pfam (PF00828) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 14 | N, RB (AL16, BL16) | 50S ribosomal protein L16 | polymer | 141 | 15977.9 | 2 | UniProt (Q72I11) Pfam (PF00252) | Thermus thermophilus HB27 | |
| 15 | O, SB (AL17, BL17) | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 2 | UniProt (Q72I33) Pfam (PF01196) | Thermus thermophilus HB27 | |
| 16 | P, TB (AL18, BL18) | 50S ribosomal protein L18 | polymer | 111 | 12508.6 | 2 | UniProt (Q72I20) Pfam (PF00861) | Thermus thermophilus HB27 | |
| 17 | Q, UB (AL19, BL19) | 50S ribosomal protein L19 | polymer | 146 | 17217.9 | 2 | UniProt (Q72JU9) Pfam (PF01245) | Thermus thermophilus HB27 | |
| 18 | R, VB (AL20, BL20) | 50S ribosomal protein L20 | polymer | 118 | 13779.3 | 2 | UniProt (Q72L76) Pfam (PF00453) | Thermus thermophilus HB27 | |
| 19 | S, WB (AL21, BL21) | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 2 | UniProt (Q72HR2) Pfam (PF00829) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 20 | T, XB (AL22, BL22) | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 2 | UniProt (Q72I09) Pfam (PF00237) | Thermus thermophilus HB27 | |
| 21 | U, YB (AL23, BL23) | 50S ribosomal protein L23 | polymer | 96 | 10759.8 | 2 | UniProt (Q72I06) Pfam (PF00276) | Thermus thermophilus HB27 | |
| 22 | V, ZB (AL24, BL24) | 50S ribosomal protein L24 | polymer | 110 | 12085.6 | 2 | UniProt (Q72I15) Pfam (PF00467) Pfam (PF17136) | Thermus thermophilus HB27 | |
| 23 | AC, W (AL25, BL25) | 50S ribosomal protein L25 | polymer | 206 | 23238.6 | 2 | UniProt (Q72IA7) Pfam (PF01386) Pfam (PF14693) | Thermus thermophilus HB27 | General stress protein CTC |
| 24 | BC, X (AL27, BL27) | 50S ribosomal protein L27 | polymer | 84 | 9397.9 | 2 | UniProt (P60493) Pfam (PF01016) UniProt (by SIFTS) (Q72HR3) | Thermus thermophilus | |
| 25 | CC, Y (AL28, BL28) | 50S ribosomal protein L28 | polymer | 98 | 11032.2 | 2 | UniProt (Q72G84) Pfam (PF00830) | Thermus thermophilus HB27 | |
| 26 | DC, Z (AL29, BL29) | 50S ribosomal protein L29 | polymer | 72 | 8670.3 | 2 | UniProt (Q72I12) Pfam (PF00831) | Thermus thermophilus HB27 | |
| 27 | AA, EC (AL30, BL30) | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 2 | UniProt (Q72I22) Pfam (PF00327) | Thermus thermophilus HB27 | |
| 28 | BA, FC (AL31, BL31) | 50S ribosomal protein L31 | polymer | 71 | 8300.5 | 2 | UniProt (Q72JR0) Pfam (PF01197) | Thermus thermophilus HB27 | |
| 29 | CA, GC (AL32, BL32) | 50S ribosomal protein L32 | polymer | 59 | 6590.9 | 2 | UniProt (P80339) Pfam (PF01783) UniProt (by SIFTS) (P62652) | Thermus thermophilus | |
| 30 | DA, HC (AL33, BL33) | 50S ribosomal protein L33 | polymer | 54 | 6632.9 | 2 | UniProt (Q72GW3) Pfam (PF00471) | Thermus thermophilus HB27 | |
| 31 | EA, IC (AL34, BL34) | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 2 | UniProt (P80340) Pfam (PF00468) | Thermus thermophilus | |
| 32 | FA, JC (AL35, BL35) | 50S ribosomal protein L35 | polymer | 64 | 7375.0 | 2 | UniProt (Q72L77) Pfam (PF01632) | Thermus thermophilus HB27 | |
| 33 | GA, KC (AL36, BL36) | 50S ribosomal protein L36 | polymer | 37 | 4435.4 | 2 | UniProt (Q72I28) Pfam (PF00444) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 34 | HA, LC (AMRN, BMRN) | mRNA | polymer | 17 | 5562.4 | 2 | synthetic construct | ||
| 35 | IA, MC (APTN, BPTN) | P-tRNA | polymer | 76 | 24616.8 | 2 | Escherichia coli | ||
| 36 | JA, NC (AS02, BS02) | 30S ribosomal protein S2 | polymer | 255 | 29186.5 | 2 | UniProt (P62662) Pfam (PF00318) | Thermus thermophilus HB27 | |
| 37 | KA, OC (AS03, BS03) | 30S ribosomal protein S3 | polymer | 238 | 26619.9 | 2 | UniProt (P62663) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus HB27 | |
| 38 | LA, PC (AS04, BS04) | 30S ribosomal protein S4 | polymer | 208 | 24242.3 | 2 | UniProt (P62664) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 39 | MA, QC (AS05, BS05) | 30S ribosomal protein S5 | polymer | 161 | 17452.2 | 2 | UniProt (P62665) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus HB27 | |
| 40 | NA, RC (AS06, BS06) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 2 | UniProt (P62666) Pfam (PF01250) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 41 | OA, SC (AS07, BS07) | 30S ribosomal protein S7 | polymer | 155 | 17919.8 | 2 | UniProt (P62667) Pfam (PF00177) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 42 | PA, TC (AS08, BS08) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 2 | UniProt (P62668) Pfam (PF00410) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 43 | QA, UC (AS09, BS09) | 30S ribosomal protein S9 | polymer | 128 | 14429.7 | 2 | UniProt (P62669) Pfam (PF00380) | Thermus thermophilus HB27 | |
| 44 | RA, VC (AS10, BS10) | 30S ribosomal protein S10 | polymer | 104 | 11823.8 | 2 | UniProt (P62653) Pfam (PF00338) | Thermus thermophilus HB27 | |
| 45 | SA, WC (AS11, BS11) | 30S ribosomal protein S11 | polymer | 128 | 13606.7 | 2 | UniProt (P62654) Pfam (PF00411) | Thermus thermophilus HB27 | |
| 46 | TA, XC (AS12, BS12) | 30S ribosomal protein S12 | polymer | 131 | 14506.2 | 2 | UniProt (P61941) Pfam (PF00164) | Thermus thermophilus HB27 | |
| 47 | UA, YC (AS13, BS13) | 30S ribosomal protein S13 | polymer | 125 | 14207.7 | 2 | UniProt (P62655) Pfam (PF00416) | Thermus thermophilus HB27 | |
| 48 | VA, ZC (AS14, BS14) | 30S ribosomal protein S14 type Z | polymer | 60 | 7027.5 | 2 | UniProt (P62656) Pfam (PF00253) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 49 | AD, WA (AS15, BS15) | 30S ribosomal protein S15 | polymer | 88 | 10447.2 | 2 | UniProt (P62657) Pfam (PF00312) | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | |
| 50 | BD, XA (AS16, BS16) | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 2 | UniProt (P62238) Pfam (PF00886) | Thermus thermophilus HB27 | |
| 51 | CD, YA (AS17, BS17) | 30S ribosomal protein S17 | polymer | 104 | 12193.5 | 2 | UniProt (P62658) Pfam (PF00366) | Thermus thermophilus HB27 | |
| 52 | DD, ZA (AS18, BS18) | 30S ribosomal protein S18 | polymer | 87 | 10127.1 | 2 | UniProt (P62659) Pfam (PF01084) | Thermus thermophilus HB27 | |
| 53 | AB, ED (AS19, BS19) | 30S ribosomal protein S19 | polymer | 92 | 10474.3 | 2 | UniProt (P62660) Pfam (PF00203) | Thermus thermophilus HB27 | |
| 54 | BB, FD (AS20, BS20) | 30S ribosomal protein S20 | polymer | 105 | 11590.9 | 2 | UniProt (P62661) Pfam (PF01649) | Thermus thermophilus HB27 | |
| 55 | CB, GD (ATHX, BTHX) | 30S ribosomal protein Thx | polymer | 26 | 3218.8 | 2 | UniProt (P62613) Pfam (PF17070) | Thermus thermophilus HB27 | |
| 56 | GB (BATN) | A tRNA | polymer | 85 | 27544.7 | 1 | Escherichia coli | ||
| 57 | AE, AF, AG, AH, AI... (A16S, A23S, AL21, B16S, B23S...) | MAGNESIUM ION | non-polymer | 24.3 | 359 | Chemie (MG) | |||
| 58 | AR, PI (BS04, AS04) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 2 | Chemie (SF4) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 111 |
| Total formula weight | 4442340.9 | |
| Non-Polymers* | Number of molecules | 361 |
| Total formula weight | 9428.8 | |
| All* | Total formula weight | 4451769.7 |
