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6MYT

Avian mitochondrial complex II with Atpenin A5 bound, sidechain in pocket

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1ASuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrialpolymer62168256.91UniProt (F1NPJ4)
Pfam (PF00890)
Pfam (PF02910)
UniProt (by SIFTS) (Q9YHT1)
In PDB
Gallus gallus (Chicken)
2BSuccinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrialpolymer25228685.21UniProt (Q9YHT2)
Pfam (PF13085)
Pfam (PF13534)
In PDB
Gallus gallus (Chicken)Iron-sulfur subunit of complex II,Ip
3CSuccinate dehydrogenase cytochrome b, large subunitpolymer14015391.21UniProt (D0VWW3)
Pfam (PF01127)
In PDB
Gallus gallus (Chicken)
4DSuccinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrialpolymer10310971.61UniProt (Q5ZIS0)
Pfam (PF05328)
In PDB
Gallus gallus (Chicken)CybS,Succinate dehydrogenase complex subunit D,Succinate-ubiquinone oxidoreductase cytochrome b small subunit,Succinate-ubiquinone reductase membrane anchor subunit
5AFLAVIN-ADENINE DINUCLEOTIDEnon-polymer785.51Chemie (FAD)
6AOXALOACETATE IONnon-polymer131.11Chemie (OAA)
7APOTASSIUM IONnon-polymer39.11Chemie (K)
8A, B, C, DUNKNOWN LIGANDnon-polymer59Chemie (UNL)
9ADI(HYDROXYETHYL)ETHERnon-polymer106.11Chemie (PEG)
10BFE2/S2 (INORGANIC) CLUSTERnon-polymer175.81Chemie (FES)
11BIRON/SULFUR CLUSTERnon-polymer351.61Chemie (SF4)
12BFE3-S4 CLUSTERnon-polymer295.81Chemie (F3S)
13C3-[(2S,4S,5R)-5,6-DICHLORO-2,4-DIMETHYL-1-OXOHEXYL]-4-HYDROXY-5,6-DIMETHOXY-2(1H)-PYRIDINONEnon-polymer366.21Chemie (AT5)
14CPROTOPORPHYRIN IX CONTAINING FEnon-polymer616.51Chemie (HEM)
15CUNDECYL-MALTOSIDEnon-polymer496.61Chemie (UMQ)
16D1,2-Distearoyl-sn-glycerophosphoethanolaminenon-polymer748.11Chemie (3PE)
17waterwater18.0200Chemie (HOH)
Sequence modifications
C: 1 - 140 (UniProt: D0VWW3)
PDBExternal DatabaseDetails
Ala 139Ser 139conflict
Met 140Glu 140conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight123304.9
Non-Polymers*Number of molecules70
Total formula weight4112.5
All*Total formula weight127417.4
*Water molecules are not included.

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PDB entries from 2024-08-28

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