6MYR
Avian mitochondrial complex II with thiapronil bound
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial | polymer | 621 | 68256.9 | 1 | UniProt (F1NPJ4) Pfam (PF00890) Pfam (PF02910) UniProt (by SIFTS) (Q9YHT1) | Gallus gallus (Chicken) | |
| 2 | B (B) | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial | polymer | 252 | 28685.2 | 1 | UniProt (Q9YHT2) Pfam (PF13085) Pfam (PF13534) | Gallus gallus (Chicken) | |
| 3 | C (C) | Succinate dehydrogenase cytochrome b, large subunit | polymer | 140 | 15378.1 | 1 | UniProt (D0VWW3) | Gallus gallus (Chicken) | |
| 4 | D (D) | Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial | polymer | 103 | 10971.6 | 1 | UniProt (Q5ZIS0) Pfam (PF05328) | Gallus gallus (Chicken) | |
| 5 | E (A) | FLAVIN-ADENINE DINUCLEOTIDE | non-polymer | 785.5 | 1 | Chemie (FAD) | |||
| 6 | F (A) | OXALOACETATE ION | non-polymer | 131.1 | 1 | Chemie (OAA) PubChem (3260017) | |||
| 7 | G (A) | POTASSIUM ION | non-polymer | 39.1 | 1 | Chemie (K) PubChem (813) | |||
| 8 | H (A) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) PubChem (8117) | |||
| 9 | AA, AB, BA, BB, CA... (B, D, A, C) | UNKNOWN LIGAND | non-polymer | 43 | Chemie (UNL) | ||||
| 10 | X (B) | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 1 | Chemie (FES) | |||
| 11 | Y (B) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 1 | Chemie (SF4) | |||
| 12 | Z (B) | FE3-S4 CLUSTER | non-polymer | 295.8 | 1 | Chemie (F3S) | |||
| 13 | MA (C) | thiapronil | non-polymer | 338.8 | 1 | Chemie (K7G) | |||
| 14 | NA (C) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 1 | Chemie (HEM) | |||
| 15 | OA (C) | UNDECYL-MALTOSIDE | non-polymer | 496.6 | 1 | Chemie (UMQ) PubChem (44462510) PubChem (447793) PubChem (46936455) PubChem (58112566) PubChem (59518662) PubChem (5076192) PubChem (68343856) PubChem (70699429) PubChem (70701336) PubChem (70701337) PubChem (70839940) PubChem (70841479) PubChem (70863062) PubChem (71300308) PubChem (70699426) PubChem (70699431) PubChem (70796434) PubChem (89952000) PubChem (71300307) PubChem (92132109) PubChem (124643296) PubChem (126731015) PubChem (126731038) PubChem (126735855) PubChem (126735857) PubChem (131632466) PubChem (169544249) | |||
| 16 | UA (D) | octyl beta-D-glucopyranoside | non-polymer | 292.4 | 1 | Chemie (BOG) | |||
| 17 | VA (D) | 1,2-Distearoyl-sn-glycerophosphoethanolamine | non-polymer | 748.1 | 1 | Chemie (3PE) | |||
| 18 | HB, IB, JB, KB (A, B, C, D) | water | water | 18.0 | 189 | Chemie (HOH) |
Sequence modifications
C: 1 - 140 (UniProt: D0VWW3)
| PDB | External Database | Details |
|---|---|---|
| Ala 139 | Ser 139 | conflict |
| Met 140 | Glu 140 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 123291.9 | |
| Non-Polymers* | Number of molecules | 55 |
| Total formula weight | 4377.4 | |
| All* | Total formula weight | 127669.3 |
