6MKM
Crystallographic solvent mapping analysis of DMSO/Tris bound to APE1
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | DNA-(apurinic or apyrimidinic site) lyase | polymer | 285 | 32011.4 | 1 | UniProt (P27695) Pfam (PF03372) | Homo sapiens (Human) | APEX nuclease, APEN, Apurinic-apyrimidinic endonuclease 1, APE-1, REF-1, Redox factor-1 |
| 2 | B (A) | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | non-polymer | 122.1 | 1 | Chemie (TRS) | |||
| 3 | C, D (A) | DIMETHYL SULFOXIDE | non-polymer | 78.1 | 2 | Chemie (DMS) | |||
| 4 | E, F (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 2 | Chemie (EDO) | |||
| 5 | G (A) | water | water | 18.0 | 158 | Chemie (HOH) |
Sequence modifications
A: 40 - 318 (UniProt: P27695)
| PDB | External Database | Details |
|---|---|---|
| Gly 34 | - | expression tag |
| Ser 35 | - | expression tag |
| His 36 | - | expression tag |
| Met 37 | - | expression tag |
| Ala 38 | - | expression tag |
| Ser 39 | - | expression tag |
| Ala 138 | Cys 138 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 32011.4 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 402.5 | |
| All* | Total formula weight | 32413.9 |
