6MKM
Crystallographic solvent mapping analysis of DMSO/Tris bound to APE1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-06-25 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 1.07109 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 46.552, 136.601, 45.084 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.626 - 1.673 |
R-factor | 0.2069 |
Rwork | 0.205 |
R-free | 0.24970 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.934 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX ((phenix.refine)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.700 |
High resolution limit [Å] | 1.670 | 4.530 | 1.670 |
Rmerge | 0.077 | 0.053 | 0.384 |
Total number of observations | 138760 | ||
Number of reflections | 32466 | 1819 | 1307 |
<I/σ(I)> | 12.7 | ||
Completeness [%] | 95.3 | 96.3 | 79.4 |
Redundancy | 4.3 | 4.7 | 2.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 100 mM MES, pH 6.0, 200 mM sodium chloride, 18-21% PEG4000 |