Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6MKM

Crystallographic solvent mapping analysis of DMSO/Tris bound to APE1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyCCD
Collection date2008-06-25
DetectorADSC QUANTUM 210r
Wavelength(s)1.07109
Spacegroup nameP 21 21 2
Unit cell lengths46.552, 136.601, 45.084
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution37.626 - 1.673
R-factor0.2069
Rwork0.205
R-free0.24970
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.004
RMSD bond angle0.934
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwarePHENIX
Refinement softwarePHENIX ((phenix.refine))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.700
High resolution limit [Å]1.6704.5301.670
Rmerge0.0770.0530.384
Total number of observations138760
Number of reflections3246618191307
<I/σ(I)>12.7
Completeness [%]95.396.379.4
Redundancy4.34.72.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6293100 mM MES, pH 6.0, 200 mM sodium chloride, 18-21% PEG4000

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon