6M6H

Structure of HSV2 C-capsid portal vertex

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C, D, E... (A, B, C, D, E...)	Major capsid protein	polymer	1374	149399.4	6	UniProt (P89442) Pfam (PF03122)	Human herpesvirus 2 (HHV-2)	MCP,VP5
2	G (G)	Capsid vertex component 1	polymer	702	74811.9	1	UniProt (P89440) Pfam (PF04559)	Human herpesvirus 2 (HHV-2)	UL17
3	H, I (H, I)	Capsid vertex component 2	polymer	585	63604.8	2	UniProt (P89448) Pfam (PF01499)	Human herpesvirus 2 (HHV-2)	UL25
4	J, K, L, M, N... (J, K, L, M, N...)	Small capsomere-interacting protein	polymer	112	12147.7	6	UniProt (G9I257) Pfam (PF04496) UniProt (by SIFTS) (P89458)	Human herpesvirus 2 (HHV-2)	VP26
5	P, Q (P, Q)	Large tegument protein deneddylase	polymer	3122	330496.0	2	UniProt (P89459) Pfam (PF04843) Pfam (PF03586)	Human herpesvirus 2 (HHV-2)	UL36
6	R, S (R, S)	Triplex capsid protein 2	polymer	318	34373.8	2	UniProt (G9I239) Pfam (PF01802) UniProt (by SIFTS) (P89441)	Human herpesvirus 2 (HHV-2)	VP23
7	T (T)	Triplex capsid protein 1	polymer	466	50512.6	1	UniProt (G9I260) Pfam (PF03327) UniProt (by SIFTS) (P22486)	Human herpesvirus 2 (HHV-2)	VP19

Sequence modifications

G: 1 - 703 (UniProt: P89440)

PDB	External Database	Details
Met 44	Val 44	conflict
Leu 89	Ile 89	conflict
Ile 90	Leu 90	conflict
Val 94	Ile 94	conflict
Met 198	Leu 198	conflict
Leu 200	Met 200	conflict

H, I: 1 - 585 (UniProt: P89448)

PDB	External Database	Details
Tyr 36	Trp 36	conflict
Ser 38	Leu 38	conflict
Thr 106	Ala 106	conflict
Leu 540	Pro 540	conflict
Ala 555	Thr 555	conflict

P, Q: 1 - 3122 (UniProt: P89459)

PDB	External Database	Details
Arg 3076	Ser 3076	conflict

T: 1 - 466 (UniProt: G9I260)

PDB	External Database	Details
Cys 283	Arg 283	conflict

Contents of the asymmetric unit

Polymers	Number of chains	20
	Total formula weight	1951556.0
All*	Total formula weight	1951556.0

*Water molecules are not included.