6M6H
Structure of HSV2 C-capsid portal vertex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D, E... | Major capsid protein | polymer | 1374 | 149399.4 | 6 | UniProt (P89442) Pfam (PF03122) In PDB | Human herpesvirus 2 (HHV-2) | MCP,VP5 |
2 | G | Capsid vertex component 1 | polymer | 702 | 74811.9 | 1 | UniProt (P89440) Pfam (PF04559) In PDB | Human herpesvirus 2 (HHV-2) | UL17 |
3 | H, I | Capsid vertex component 2 | polymer | 585 | 63604.8 | 2 | UniProt (P89448) Pfam (PF01499) In PDB | Human herpesvirus 2 (HHV-2) | UL25 |
4 | J, K, L, M, N... | Small capsomere-interacting protein | polymer | 112 | 12147.7 | 6 | UniProt (G9I257) Pfam (PF04496) UniProt (by SIFTS) (P89458) In PDB | Human herpesvirus 2 (HHV-2) | VP26 |
5 | P, Q | Large tegument protein deneddylase | polymer | 3122 | 330496.0 | 2 | UniProt (P89459) Pfam (PF04843) Pfam (PF03586) In PDB | Human herpesvirus 2 (HHV-2) | UL36 |
6 | R, S | Triplex capsid protein 2 | polymer | 318 | 34373.8 | 2 | UniProt (G9I239) Pfam (PF01802) UniProt (by SIFTS) (P89441) In PDB | Human herpesvirus 2 (HHV-2) | VP23 |
7 | T | Triplex capsid protein 1 | polymer | 466 | 50512.6 | 1 | UniProt (G9I260) Pfam (PF03327) UniProt (by SIFTS) (P22486) In PDB | Human herpesvirus 2 (HHV-2) | VP19 |
Sequence modifications
G: 1 - 703 (UniProt: P89440)
H, I: 1 - 585 (UniProt: P89448)
P, Q: 1 - 3122 (UniProt: P89459)
T: 1 - 466 (UniProt: G9I260)
PDB | External Database | Details |
---|---|---|
Met 44 | Val 44 | conflict |
Leu 89 | Ile 89 | conflict |
Ile 90 | Leu 90 | conflict |
Val 94 | Ile 94 | conflict |
Met 198 | Leu 198 | conflict |
Leu 200 | Met 200 | conflict |
PDB | External Database | Details |
---|---|---|
Tyr 36 | Trp 36 | conflict |
Ser 38 | Leu 38 | conflict |
Thr 106 | Ala 106 | conflict |
Leu 540 | Pro 540 | conflict |
Ala 555 | Thr 555 | conflict |
PDB | External Database | Details |
---|---|---|
Arg 3076 | Ser 3076 | conflict |
PDB | External Database | Details |
---|---|---|
Cys 283 | Arg 283 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 20 |
Total formula weight | 1951556.0 | |
All* | Total formula weight | 1951556.0 |