6M6H

Structure of HSV2 C-capsid portal vertex

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005198	molecular_function	structural molecule activity
A	0019028	cellular_component	viral capsid
A	0039622	cellular_component	T=16 icosahedral viral capsid
A	0042025	cellular_component	host cell nucleus
A	0044423	cellular_component	virion component
B	0005198	molecular_function	structural molecule activity
B	0019028	cellular_component	viral capsid
B	0039622	cellular_component	T=16 icosahedral viral capsid
B	0042025	cellular_component	host cell nucleus
B	0044423	cellular_component	virion component
C	0005198	molecular_function	structural molecule activity
C	0019028	cellular_component	viral capsid
C	0039622	cellular_component	T=16 icosahedral viral capsid
C	0042025	cellular_component	host cell nucleus
C	0044423	cellular_component	virion component
D	0005198	molecular_function	structural molecule activity
D	0019028	cellular_component	viral capsid
D	0039622	cellular_component	T=16 icosahedral viral capsid
D	0042025	cellular_component	host cell nucleus
D	0044423	cellular_component	virion component
E	0005198	molecular_function	structural molecule activity
E	0019028	cellular_component	viral capsid
E	0039622	cellular_component	T=16 icosahedral viral capsid
E	0042025	cellular_component	host cell nucleus
E	0044423	cellular_component	virion component
F	0005198	molecular_function	structural molecule activity
F	0019028	cellular_component	viral capsid
F	0039622	cellular_component	T=16 icosahedral viral capsid
F	0042025	cellular_component	host cell nucleus
F	0044423	cellular_component	virion component
G	0019028	cellular_component	viral capsid
G	0042025	cellular_component	host cell nucleus
G	0044423	cellular_component	virion component
G	0051276	biological_process	chromosome organization
H	0019028	cellular_component	viral capsid
H	0019072	biological_process	viral genome packaging
H	0042025	cellular_component	host cell nucleus
H	0043657	cellular_component	host cell
H	0044423	cellular_component	virion component
H	0046718	biological_process	symbiont entry into host cell
H	0075732	biological_process	viral penetration into host nucleus
I	0019028	cellular_component	viral capsid
I	0019072	biological_process	viral genome packaging
I	0042025	cellular_component	host cell nucleus
I	0043657	cellular_component	host cell
I	0044423	cellular_component	virion component
I	0046718	biological_process	symbiont entry into host cell
I	0075732	biological_process	viral penetration into host nucleus
J	0016032	biological_process	viral process
J	0019028	cellular_component	viral capsid
J	0042025	cellular_component	host cell nucleus
J	0044423	cellular_component	virion component
K	0016032	biological_process	viral process
K	0019028	cellular_component	viral capsid
K	0042025	cellular_component	host cell nucleus
K	0044423	cellular_component	virion component
L	0016032	biological_process	viral process
L	0019028	cellular_component	viral capsid
L	0042025	cellular_component	host cell nucleus
L	0044423	cellular_component	virion component
M	0016032	biological_process	viral process
M	0019028	cellular_component	viral capsid
M	0042025	cellular_component	host cell nucleus
M	0044423	cellular_component	virion component
N	0016032	biological_process	viral process
N	0019028	cellular_component	viral capsid
N	0042025	cellular_component	host cell nucleus
N	0044423	cellular_component	virion component
O	0016032	biological_process	viral process
O	0019028	cellular_component	viral capsid
O	0042025	cellular_component	host cell nucleus
O	0044423	cellular_component	virion component
P	0004843	molecular_function	cysteine-type deubiquitinase activity
P	0006508	biological_process	proteolysis
P	0008233	molecular_function	peptidase activity
P	0008234	molecular_function	cysteine-type peptidase activity
P	0016787	molecular_function	hydrolase activity
P	0019033	cellular_component	viral tegument
P	0019784	molecular_function	deNEDDylase activity
P	0030430	cellular_component	host cell cytoplasm
P	0039648	biological_process	symbiont-mediated perturbation of host ubiquitin-like protein modification
P	0039693	biological_process	viral DNA genome replication
P	0042025	cellular_component	host cell nucleus
P	0044423	cellular_component	virion component
Q	0004843	molecular_function	cysteine-type deubiquitinase activity
Q	0006508	biological_process	proteolysis
Q	0008233	molecular_function	peptidase activity
Q	0008234	molecular_function	cysteine-type peptidase activity
Q	0016787	molecular_function	hydrolase activity
Q	0019033	cellular_component	viral tegument
Q	0019784	molecular_function	deNEDDylase activity
Q	0030430	cellular_component	host cell cytoplasm
Q	0039648	biological_process	symbiont-mediated perturbation of host ubiquitin-like protein modification
Q	0039693	biological_process	viral DNA genome replication
Q	0042025	cellular_component	host cell nucleus
Q	0044423	cellular_component	virion component
R	0005198	molecular_function	structural molecule activity
R	0019028	cellular_component	viral capsid
R	0042025	cellular_component	host cell nucleus
R	0044423	cellular_component	virion component
S	0005198	molecular_function	structural molecule activity
S	0019028	cellular_component	viral capsid
S	0042025	cellular_component	host cell nucleus
S	0044423	cellular_component	virion component
T	0003677	molecular_function	DNA binding
T	0019028	cellular_component	viral capsid
T	0019069	biological_process	viral capsid assembly
T	0042025	cellular_component	host cell nucleus
T	0044423	cellular_component	virion component

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	48
Details	Region: {"description":"Interaction with major capsid protein/MCP","evidences":[{"source":"HAMAP-Rule","id":"MF_04025","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

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