6M6G
Structure of HSV2 viron capsid portal vertex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D, E... (B, C, D, E, F...) | Major capsid protein | polymer | 1374 | 149398.4 | 6 | UniProt (P89442) Pfam (PF03122) | Human herpesvirus 2 (HHV-2) | MCP,VP5 |
2 | F, J, M, O, P... (G, M, Q, T, U...) | Small capsomere-interacting protein | polymer | 112 | 12117.6 | 6 | UniProt (G9I257) Pfam (PF04496) UniProt (by SIFTS) (P89458) | Human herpesvirus 2 (HHV-2) | VP26 |
3 | H, K (K, O) | Triplex capsid protein 2 | polymer | 318 | 34373.8 | 2 | UniProt (G9I239) Pfam (PF01802) UniProt (by SIFTS) (P89441) | Human herpesvirus 2 (HHV-2) | VP23 |
4 | I (L) | coiled coils | polymer | 84 | 7166.8 | 1 | Human herpesvirus 2 (HHV-2) | ||
5 | L (P) | Coiled coils | polymer | 87 | 7422.1 | 1 | Human herpesvirus 2 (HHV-2) | ||
6 | N (S) | Triplex capsid protein 1 | polymer | 466 | 50566.6 | 1 | UniProt (G9I260) Pfam (PF03327) UniProt (by SIFTS) (P22486) | Human herpesvirus 2 (HHV-2) | VP19 |
7 | R (k) | Capsid vertex component 1 | polymer | 702 | 74793.9 | 1 | UniProt (P89440) Pfam (PF04559) | Human herpesvirus 2 (HHV-2) | UL17 |
8 | S, T (l, m) | Capsid vertex component 2 | polymer | 585 | 63637.8 | 2 | UniProt (P89448) Pfam (PF01499) | Human herpesvirus 2 (HHV-2) | UL25 |
9 | U, V (n, o) | Large tegument protein deneddylase | polymer | 3122 | 330425.9 | 2 | UniProt (P89459) Pfam (PF04843) Pfam (PF03586) | Human herpesvirus 2 (HHV-2) | UL36 |
Sequence modifications
B, C, D, E, F, I: 1 - 1374 (UniProt: P89442)
G, M, Q, T, U, V: 1 - 112 (UniProt: G9I257)
PDB | External Database | Details |
---|---|---|
Met 17 | Ile 17 | conflict |
Val 18 | Leu 18 | conflict |
Lys 382 | Arg 382 | conflict |
His 986 | Asp 986 | conflict |
PDB | External Database | Details |
---|---|---|
Thr 22 | Met 22 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 22 |
Total formula weight | 1965920.7 | |
All* | Total formula weight | 1965920.7 |