6M6G

Structure of HSV2 viron capsid portal vertex

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C, D, E... (B, C, D, E, F...)	Major capsid protein	polymer	1374	149398.4	6	UniProt (P89442) Pfam (PF03122)	Human herpesvirus 2 (HHV-2)	MCP,VP5
2	F, J, M, O, P... (G, M, Q, T, U...)	Small capsomere-interacting protein	polymer	112	12117.6	6	UniProt (G9I257) Pfam (PF04496) UniProt (by SIFTS) (P89458)	Human herpesvirus 2 (HHV-2)	VP26
3	H, K (K, O)	Triplex capsid protein 2	polymer	318	34373.8	2	UniProt (G9I239) Pfam (PF01802) UniProt (by SIFTS) (P89441)	Human herpesvirus 2 (HHV-2)	VP23
4	I (L)	coiled coils	polymer	84	7166.8	1		Human herpesvirus 2 (HHV-2)
5	L (P)	Coiled coils	polymer	87	7422.1	1		Human herpesvirus 2 (HHV-2)
6	N (S)	Triplex capsid protein 1	polymer	466	50566.6	1	UniProt (G9I260) Pfam (PF03327) UniProt (by SIFTS) (P22486)	Human herpesvirus 2 (HHV-2)	VP19
7	R (k)	Capsid vertex component 1	polymer	702	74793.9	1	UniProt (P89440) Pfam (PF04559)	Human herpesvirus 2 (HHV-2)	UL17
8	S, T (l, m)	Capsid vertex component 2	polymer	585	63637.8	2	UniProt (P89448) Pfam (PF01499)	Human herpesvirus 2 (HHV-2)	UL25
9	U, V (n, o)	Large tegument protein deneddylase	polymer	3122	330425.9	2	UniProt (P89459) Pfam (PF04843) Pfam (PF03586)	Human herpesvirus 2 (HHV-2)	UL36

Sequence modifications

B, C, D, E, F, I: 1 - 1374 (UniProt: P89442)

PDB	External Database	Details
Met 17	Ile 17	conflict
Val 18	Leu 18	conflict
Lys 382	Arg 382	conflict
His 986	Asp 986	conflict

G, M, Q, T, U, V: 1 - 112 (UniProt: G9I257)

PDB	External Database	Details
Thr 22	Met 22	conflict

Contents of the asymmetric unit

Polymers	Number of chains	22
	Total formula weight	1965920.7
All*	Total formula weight	1965920.7

*Water molecules are not included.