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6M6G

Structure of HSV2 viron capsid portal vertex

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D, E...
(B, C, D, E, F...)
Major capsid proteinpolymer1374149398.46UniProt (P89442)
Pfam (PF03122)
Human herpesvirus 2 (HHV-2)MCP,VP5
2F, J, M, O, P...
(G, M, Q, T, U...)
Small capsomere-interacting proteinpolymer11212117.66UniProt (G9I257)
Pfam (PF04496)
UniProt (by SIFTS) (P89458)
Human herpesvirus 2 (HHV-2)VP26
3H, K
(K, O)
Triplex capsid protein 2polymer31834373.82UniProt (G9I239)
Pfam (PF01802)
UniProt (by SIFTS) (P89441)
Human herpesvirus 2 (HHV-2)VP23
4I
(L)
coiled coilspolymer847166.81Human herpesvirus 2 (HHV-2)
5L
(P)
Coiled coilspolymer877422.11Human herpesvirus 2 (HHV-2)
6N
(S)
Triplex capsid protein 1polymer46650566.61UniProt (G9I260)
Pfam (PF03327)
UniProt (by SIFTS) (P22486)
Human herpesvirus 2 (HHV-2)VP19
7R
(k)
Capsid vertex component 1polymer70274793.91UniProt (P89440)
Pfam (PF04559)
Human herpesvirus 2 (HHV-2)UL17
8S, T
(l, m)
Capsid vertex component 2polymer58563637.82UniProt (P89448)
Pfam (PF01499)
Human herpesvirus 2 (HHV-2)UL25
9U, V
(n, o)
Large tegument protein deneddylasepolymer3122330425.92UniProt (P89459)
Pfam (PF04843)
Pfam (PF03586)
Human herpesvirus 2 (HHV-2)UL36
Sequence modifications
B, C, D, E, F, I: 1 - 1374 (UniProt: P89442)
PDBExternal DatabaseDetails
Met 17Ile 17conflict
Val 18Leu 18conflict
Lys 382Arg 382conflict
His 986Asp 986conflict
G, M, Q, T, U, V: 1 - 112 (UniProt: G9I257)
PDBExternal DatabaseDetails
Thr 22Met 22conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains22
Total formula weight1965920.7
All*Total formula weight1965920.7
*Water molecules are not included.

239149

PDB entries from 2025-07-23

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