6M17
The 2019-nCoV RBD/ACE2-B0AT1 complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D (A, C) | Sodium-dependent neutral amino acid transporter B(0)AT1 | polymer | 654 | 73289.4 | 2 | UniProt (Q695T7) Pfam (PF00209) | Homo sapiens (Human) | Solute carrier family 6 member 19,System B(0) neutral amino acid transporter AT1 |
| 2 | B, E (B, D) | Angiotensin-converting enzyme 2 | polymer | 814 | 93756.1 | 2 | UniProt (Q9BYF1) Pfam (PF01401) Pfam (PF16959) | Homo sapiens (Human) | ACE-related carboxypeptidase,Angiotensin-converting enzyme homolog,ACEH,Metalloprotease MPROT15 |
| 3 | C, F (E, F) | Spike protein S1 | polymer | 223 | 25122.3 | 2 | UniProt (P0DTC2) Pfam (PF09408) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | S glycoprotein,E2,Peplomer protein,SARS-coV-2 Receptor Binding Domain |
| 4 | G, H, I, J, K... (G, H, I, J, K...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 14 | In PDB GlyTouCan (G42666HT) | |||
| 5 | N, V (N, V) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 627.6 | 2 | In PDB GlyTouCan (G47362BJ) | triacetyl-beta-chitotriose | ||
| 6 | BA, DA, EA, FA, GA... (B, C, D, A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 10 | Chemie (NAG) | |||
| 7 | AA, HA (A, C) | LEUCINE | non-polymer | 131.2 | 2 | Chemie (LEU) | |||
| 8 | CA, JA (B, D) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 9 | KA, LA (B, D) | water | water | 18.0 | 8 | Chemie (HOH) |
Sequence modifications
A, C: 2 - 634 (UniProt: Q695T7)
B, D: -6 - 805 (UniProt: Q9BYF1)
| PDB | External Database | Details |
|---|---|---|
| Met -19 | - | initiating methionine |
| Ala -18 | - | expression tag |
| Asp -17 | - | expression tag |
| Tyr -16 | - | expression tag |
| Lys -15 | - | expression tag |
| Asp -14 | - | expression tag |
| Asp -13 | - | expression tag |
| Asp -12 | - | expression tag |
| Asp -11 | - | expression tag |
| Lys -10 | - | expression tag |
| Ser -9 | - | expression tag |
| Gly -8 | - | expression tag |
| Pro -7 | - | expression tag |
| Asp -6 | - | expression tag |
| Glu -5 | - | expression tag |
| Val -4 | - | expression tag |
| Asp -3 | - | expression tag |
| Ala -2 | - | expression tag |
| Ser -1 | - | expression tag |
| Gly 0 | - | expression tag |
| Arg 1 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met -8 | - | initiating methionine |
| Arg -7 | - | expression tag |
| Trp 10 | - | insertion |
| Ser 11 | - | insertion |
| His 12 | - | insertion |
| Pro 13 | - | insertion |
| Gln 14 | - | insertion |
| Phe 15 | - | insertion |
| Glu 16 | - | insertion |
| Lys 17 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 384335.5 | |
| Branched | Number of molecules | 16 |
| Total formula weight | 7196.8 | |
| Non-Polymers* | Number of molecules | 14 |
| Total formula weight | 2605.2 | |
| All* | Total formula weight | 394137.6 |
