6KMA
Crystal structure of SucA with glycolaldehyde-1-13C from Vibrio vulnificus
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D | Oxoglutarate dehydrogenase (Succinyl-transferring), E1 component | polymer | 886 | 99516.0 | 4 | UniProt (A0A3Q0L1E1) Pfam (PF00676) Pfam (PF02779) Pfam (PF16870) In PDB | Vibrio vulnificus (strain CMCP6) | |
2 | A, B, C, D | HEXAETHYLENE GLYCOL | non-polymer | 282.3 | 4 | Chemie (P6G) | |||
3 | A, C | CALCIUM ION | non-polymer | 40.1 | 2 | Chemie (CA) | |||
4 | A, B, C, D | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) | |||
5 | A, B, C, D | THIAMINE DIPHOSPHATE | non-polymer | 425.3 | 4 | Chemie (TPP) | |||
6 | A, B, C, D | 2-oxidanylethanal | non-polymer | 60.1 | 8 | Chemie (DW3) | |||
7 | water | water | 18.0 | 1243 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 85 - 941 (UniProt: A0A3Q0L1E1)
PDB | External Database | Details |
---|---|---|
Met 56 | - | initiating methionine |
Gly 57 | - | expression tag |
Ser 58 | - | expression tag |
Ser 59 | - | expression tag |
His 60 | - | expression tag |
His 61 | - | expression tag |
His 62 | - | expression tag |
His 63 | - | expression tag |
His 64 | - | expression tag |
His 65 | - | expression tag |
Asp 66 | - | expression tag |
Tyr 67 | - | expression tag |
Asp 68 | - | expression tag |
Ile 69 | - | expression tag |
Pro 70 | - | expression tag |
Thr 71 | - | expression tag |
Thr 72 | - | expression tag |
Glu 73 | - | expression tag |
Asn 74 | - | expression tag |
Leu 75 | - | expression tag |
Tyr 76 | - | expression tag |
Phe 77 | - | expression tag |
Gln 78 | - | expression tag |
Gly 79 | - | expression tag |
Gly 80 | - | expression tag |
Gly 81 | - | expression tag |
Gly 82 | - | expression tag |
Gly 83 | - | expression tag |
Gly 84 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 398064.0 | |
Non-Polymers* | Number of molecules | 22 |
Total formula weight | 3488.4 | |
All* | Total formula weight | 401552.4 |