6KMA
Crystal structure of SucA with glycolaldehyde-1-13C from Vibrio vulnificus
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004591 | molecular_function | oxoglutarate dehydrogenase (succinyl-transferring) activity |
| A | 0005829 | cellular_component | cytosol |
| A | 0006096 | biological_process | glycolytic process |
| A | 0006099 | biological_process | tricarboxylic acid cycle |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0016624 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor |
| A | 0030976 | molecular_function | thiamine pyrophosphate binding |
| A | 0045252 | cellular_component | oxoglutarate dehydrogenase complex |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0004591 | molecular_function | oxoglutarate dehydrogenase (succinyl-transferring) activity |
| B | 0005829 | cellular_component | cytosol |
| B | 0006096 | biological_process | glycolytic process |
| B | 0006099 | biological_process | tricarboxylic acid cycle |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0016624 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor |
| B | 0030976 | molecular_function | thiamine pyrophosphate binding |
| B | 0045252 | cellular_component | oxoglutarate dehydrogenase complex |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0004591 | molecular_function | oxoglutarate dehydrogenase (succinyl-transferring) activity |
| C | 0005829 | cellular_component | cytosol |
| C | 0006096 | biological_process | glycolytic process |
| C | 0006099 | biological_process | tricarboxylic acid cycle |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0016624 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor |
| C | 0030976 | molecular_function | thiamine pyrophosphate binding |
| C | 0045252 | cellular_component | oxoglutarate dehydrogenase complex |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0004591 | molecular_function | oxoglutarate dehydrogenase (succinyl-transferring) activity |
| D | 0005829 | cellular_component | cytosol |
| D | 0006096 | biological_process | glycolytic process |
| D | 0006099 | biological_process | tricarboxylic acid cycle |
| D | 0016491 | molecular_function | oxidoreductase activity |
| D | 0016624 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor |
| D | 0030976 | molecular_function | thiamine pyrophosphate binding |
| D | 0045252 | cellular_component | oxoglutarate dehydrogenase complex |
| D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 9 |
| Details | binding site for residue P6G A 1001 |
| Chain | Residue |
| A | PHE304 |
| A | SER305 |
| A | LEU319 |
| A | ALA320 |
| A | PHE321 |
| A | VAL332 |
| A | SER336 |
| A | MET529 |
| A | ARG713 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | binding site for residue CA A 1002 |
| Chain | Residue |
| A | GLU665 |
| A | HOH1164 |
| B | GLU665 |
| B | HOH1138 |
| B | HOH1164 |
| B | HOH1202 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue MG A 1003 |
| Chain | Residue |
| A | ASP360 |
| A | ASN393 |
| A | VAL395 |
| A | TPP1004 |
| A | HOH1113 |
| site_id | AC4 |
| Number of Residues | 23 |
| Details | binding site for residue TPP A 1004 |
| Chain | Residue |
| A | HIS263 |
| A | ARG264 |
| A | SER324 |
| A | HIS325 |
| A | LEU326 |
| A | GLY359 |
| A | ASP360 |
| A | SER361 |
| A | ALA362 |
| A | GLN366 |
| A | ASN393 |
| A | VAL395 |
| A | HIS463 |
| A | MG1003 |
| A | HOH1113 |
| A | HOH1173 |
| A | HOH1257 |
| B | GLN619 |
| B | LEU662 |
| B | GLU664 |
| B | GLN688 |
| B | PHE692 |
| B | DW31001 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | binding site for residue DW3 A 1005 |
| Chain | Residue |
| A | TYR300 |
| A | HIS301 |
| A | SER324 |
| A | HOH1235 |
| B | DW31001 |
| site_id | AC6 |
| Number of Residues | 7 |
| Details | binding site for residue DW3 A 1006 |
| Chain | Residue |
| A | GLN688 |
| A | PHE689 |
| A | PHE692 |
| A | HIS732 |
| B | PHE397 |
| B | TPP1004 |
| B | DW31005 |
| site_id | AC7 |
| Number of Residues | 7 |
| Details | binding site for residue DW3 B 1001 |
| Chain | Residue |
| A | PHE397 |
| A | TPP1004 |
| A | DW31005 |
| B | GLN688 |
| B | PHE689 |
| B | PHE692 |
| B | HIS732 |
| site_id | AC8 |
| Number of Residues | 9 |
| Details | binding site for residue P6G B 1002 |
| Chain | Residue |
| B | PHE304 |
| B | SER305 |
| B | LEU319 |
| B | ALA320 |
| B | PHE321 |
| B | VAL332 |
| B | SER336 |
| B | ARG713 |
| B | HOH1133 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | binding site for residue MG B 1003 |
| Chain | Residue |
| B | ASP360 |
| B | ASN393 |
| B | VAL395 |
| B | TPP1004 |
| B | HOH1117 |
| site_id | AD1 |
| Number of Residues | 24 |
| Details | binding site for residue TPP B 1004 |
| Chain | Residue |
| B | HOH1362 |
| A | GLN619 |
| A | LEU662 |
| A | GLU664 |
| A | GLN688 |
| A | PHE692 |
| A | DW31006 |
| B | HIS263 |
| B | ARG264 |
| B | SER324 |
| B | HIS325 |
| B | LEU326 |
| B | GLY359 |
| B | ASP360 |
| B | SER361 |
| B | ALA362 |
| B | GLN366 |
| B | ASN393 |
| B | VAL395 |
| B | HIS463 |
| B | MG1003 |
| B | HOH1117 |
| B | HOH1193 |
| B | HOH1319 |
| site_id | AD2 |
| Number of Residues | 6 |
| Details | binding site for residue DW3 B 1005 |
| Chain | Residue |
| A | HIS732 |
| A | DW31006 |
| B | TYR300 |
| B | HIS301 |
| B | SER324 |
| B | HOH1188 |
| site_id | AD3 |
| Number of Residues | 8 |
| Details | binding site for residue P6G C 1001 |
| Chain | Residue |
| C | SER305 |
| C | ALA318 |
| C | LEU319 |
| C | PHE321 |
| C | VAL332 |
| C | SER336 |
| C | ARG713 |
| C | HOH1148 |
| site_id | AD4 |
| Number of Residues | 6 |
| Details | binding site for residue CA C 1002 |
| Chain | Residue |
| C | GLU665 |
| C | HOH1131 |
| C | HOH1180 |
| C | HOH1191 |
| D | GLU665 |
| D | HOH1124 |
| site_id | AD5 |
| Number of Residues | 5 |
| Details | binding site for residue MG C 1003 |
| Chain | Residue |
| C | ASP360 |
| C | ASN393 |
| C | VAL395 |
| C | TPP1004 |
| C | HOH1165 |
| site_id | AD6 |
| Number of Residues | 24 |
| Details | binding site for residue TPP C 1004 |
| Chain | Residue |
| C | HIS263 |
| C | ARG264 |
| C | SER324 |
| C | HIS325 |
| C | LEU326 |
| C | GLY359 |
| C | ASP360 |
| C | SER361 |
| C | ALA362 |
| C | GLN366 |
| C | ASN393 |
| C | VAL395 |
| C | GLY396 |
| C | HIS463 |
| C | MG1003 |
| C | HOH1165 |
| C | HOH1171 |
| C | HOH1197 |
| D | GLN619 |
| D | LEU662 |
| D | GLU664 |
| D | GLN688 |
| D | PHE692 |
| D | DW31001 |
| site_id | AD7 |
| Number of Residues | 6 |
| Details | binding site for residue DW3 C 1005 |
| Chain | Residue |
| C | TYR300 |
| C | HIS301 |
| C | SER324 |
| C | HOH1294 |
| D | HIS732 |
| D | DW31001 |
| site_id | AD8 |
| Number of Residues | 6 |
| Details | binding site for residue DW3 C 1006 |
| Chain | Residue |
| C | PHE692 |
| C | HIS732 |
| C | HOH1211 |
| D | HIS463 |
| D | TPP1004 |
| D | DW31005 |
| site_id | AD9 |
| Number of Residues | 6 |
| Details | binding site for residue DW3 D 1001 |
| Chain | Residue |
| C | TPP1004 |
| C | DW31005 |
| D | PHE689 |
| D | PHE692 |
| D | HIS732 |
| D | HOH1186 |
| site_id | AE1 |
| Number of Residues | 7 |
| Details | binding site for residue P6G D 1002 |
| Chain | Residue |
| D | SER305 |
| D | LEU319 |
| D | ALA320 |
| D | VAL332 |
| D | SER336 |
| D | ARG713 |
| D | HOH1160 |
| site_id | AE2 |
| Number of Residues | 5 |
| Details | binding site for residue MG D 1003 |
| Chain | Residue |
| D | ASP360 |
| D | ASN393 |
| D | VAL395 |
| D | TPP1004 |
| D | HOH1142 |
| site_id | AE3 |
| Number of Residues | 25 |
| Details | binding site for residue TPP D 1004 |
| Chain | Residue |
| C | GLN619 |
| C | LEU662 |
| C | GLU664 |
| C | GLN688 |
| C | PHE692 |
| C | DW31006 |
| D | HIS263 |
| D | ARG264 |
| D | SER324 |
| D | HIS325 |
| D | LEU326 |
| D | GLY359 |
| D | ASP360 |
| D | SER361 |
| D | ALA362 |
| D | GLN366 |
| D | ASN393 |
| D | VAL395 |
| D | GLY396 |
| D | HIS463 |
| D | MG1003 |
| D | HOH1142 |
| D | HOH1169 |
| D | HOH1207 |
| D | HOH1332 |
| site_id | AE4 |
| Number of Residues | 6 |
| Details | binding site for residue DW3 D 1005 |
| Chain | Residue |
| C | DW31006 |
| D | HIS263 |
| D | TYR300 |
| D | HIS301 |
| D | SER324 |
| D | HOH1301 |
