6KMA
Crystal structure of SucA with glycolaldehyde-1-13C from Vibrio vulnificus
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004591 | molecular_function | oxoglutarate dehydrogenase (succinyl-transferring) activity |
A | 0005829 | cellular_component | cytosol |
A | 0006099 | biological_process | tricarboxylic acid cycle |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016624 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor |
A | 0030976 | molecular_function | thiamine pyrophosphate binding |
A | 0045252 | cellular_component | oxoglutarate dehydrogenase complex |
A | 0046872 | molecular_function | metal ion binding |
B | 0004591 | molecular_function | oxoglutarate dehydrogenase (succinyl-transferring) activity |
B | 0005829 | cellular_component | cytosol |
B | 0006099 | biological_process | tricarboxylic acid cycle |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016624 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor |
B | 0030976 | molecular_function | thiamine pyrophosphate binding |
B | 0045252 | cellular_component | oxoglutarate dehydrogenase complex |
B | 0046872 | molecular_function | metal ion binding |
C | 0004591 | molecular_function | oxoglutarate dehydrogenase (succinyl-transferring) activity |
C | 0005829 | cellular_component | cytosol |
C | 0006099 | biological_process | tricarboxylic acid cycle |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0016624 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor |
C | 0030976 | molecular_function | thiamine pyrophosphate binding |
C | 0045252 | cellular_component | oxoglutarate dehydrogenase complex |
C | 0046872 | molecular_function | metal ion binding |
D | 0004591 | molecular_function | oxoglutarate dehydrogenase (succinyl-transferring) activity |
D | 0005829 | cellular_component | cytosol |
D | 0006099 | biological_process | tricarboxylic acid cycle |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0016624 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor |
D | 0030976 | molecular_function | thiamine pyrophosphate binding |
D | 0045252 | cellular_component | oxoglutarate dehydrogenase complex |
D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 9 |
Details | binding site for residue P6G A 1001 |
Chain | Residue |
A | PHE304 |
A | SER305 |
A | LEU319 |
A | ALA320 |
A | PHE321 |
A | VAL332 |
A | SER336 |
A | MET529 |
A | ARG713 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue CA A 1002 |
Chain | Residue |
A | GLU665 |
A | HOH1164 |
B | GLU665 |
B | HOH1138 |
B | HOH1164 |
B | HOH1202 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue MG A 1003 |
Chain | Residue |
A | ASP360 |
A | ASN393 |
A | VAL395 |
A | TPP1004 |
A | HOH1113 |
site_id | AC4 |
Number of Residues | 23 |
Details | binding site for residue TPP A 1004 |
Chain | Residue |
A | HIS263 |
A | ARG264 |
A | SER324 |
A | HIS325 |
A | LEU326 |
A | GLY359 |
A | ASP360 |
A | SER361 |
A | ALA362 |
A | GLN366 |
A | ASN393 |
A | VAL395 |
A | HIS463 |
A | MG1003 |
A | HOH1113 |
A | HOH1173 |
A | HOH1257 |
B | GLN619 |
B | LEU662 |
B | GLU664 |
B | GLN688 |
B | PHE692 |
B | DW31001 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue DW3 A 1005 |
Chain | Residue |
A | TYR300 |
A | HIS301 |
A | SER324 |
A | HOH1235 |
B | DW31001 |
site_id | AC6 |
Number of Residues | 7 |
Details | binding site for residue DW3 A 1006 |
Chain | Residue |
A | GLN688 |
A | PHE689 |
A | PHE692 |
A | HIS732 |
B | PHE397 |
B | TPP1004 |
B | DW31005 |
site_id | AC7 |
Number of Residues | 7 |
Details | binding site for residue DW3 B 1001 |
Chain | Residue |
A | PHE397 |
A | TPP1004 |
A | DW31005 |
B | GLN688 |
B | PHE689 |
B | PHE692 |
B | HIS732 |
site_id | AC8 |
Number of Residues | 9 |
Details | binding site for residue P6G B 1002 |
Chain | Residue |
B | PHE304 |
B | SER305 |
B | LEU319 |
B | ALA320 |
B | PHE321 |
B | VAL332 |
B | SER336 |
B | ARG713 |
B | HOH1133 |
site_id | AC9 |
Number of Residues | 5 |
Details | binding site for residue MG B 1003 |
Chain | Residue |
B | ASP360 |
B | ASN393 |
B | VAL395 |
B | TPP1004 |
B | HOH1117 |
site_id | AD1 |
Number of Residues | 24 |
Details | binding site for residue TPP B 1004 |
Chain | Residue |
B | HOH1362 |
A | GLN619 |
A | LEU662 |
A | GLU664 |
A | GLN688 |
A | PHE692 |
A | DW31006 |
B | HIS263 |
B | ARG264 |
B | SER324 |
B | HIS325 |
B | LEU326 |
B | GLY359 |
B | ASP360 |
B | SER361 |
B | ALA362 |
B | GLN366 |
B | ASN393 |
B | VAL395 |
B | HIS463 |
B | MG1003 |
B | HOH1117 |
B | HOH1193 |
B | HOH1319 |
site_id | AD2 |
Number of Residues | 6 |
Details | binding site for residue DW3 B 1005 |
Chain | Residue |
A | HIS732 |
A | DW31006 |
B | TYR300 |
B | HIS301 |
B | SER324 |
B | HOH1188 |
site_id | AD3 |
Number of Residues | 8 |
Details | binding site for residue P6G C 1001 |
Chain | Residue |
C | SER305 |
C | ALA318 |
C | LEU319 |
C | PHE321 |
C | VAL332 |
C | SER336 |
C | ARG713 |
C | HOH1148 |
site_id | AD4 |
Number of Residues | 6 |
Details | binding site for residue CA C 1002 |
Chain | Residue |
C | GLU665 |
C | HOH1131 |
C | HOH1180 |
C | HOH1191 |
D | GLU665 |
D | HOH1124 |
site_id | AD5 |
Number of Residues | 5 |
Details | binding site for residue MG C 1003 |
Chain | Residue |
C | ASP360 |
C | ASN393 |
C | VAL395 |
C | TPP1004 |
C | HOH1165 |
site_id | AD6 |
Number of Residues | 24 |
Details | binding site for residue TPP C 1004 |
Chain | Residue |
C | HIS263 |
C | ARG264 |
C | SER324 |
C | HIS325 |
C | LEU326 |
C | GLY359 |
C | ASP360 |
C | SER361 |
C | ALA362 |
C | GLN366 |
C | ASN393 |
C | VAL395 |
C | GLY396 |
C | HIS463 |
C | MG1003 |
C | HOH1165 |
C | HOH1171 |
C | HOH1197 |
D | GLN619 |
D | LEU662 |
D | GLU664 |
D | GLN688 |
D | PHE692 |
D | DW31001 |
site_id | AD7 |
Number of Residues | 6 |
Details | binding site for residue DW3 C 1005 |
Chain | Residue |
C | TYR300 |
C | HIS301 |
C | SER324 |
C | HOH1294 |
D | HIS732 |
D | DW31001 |
site_id | AD8 |
Number of Residues | 6 |
Details | binding site for residue DW3 C 1006 |
Chain | Residue |
C | PHE692 |
C | HIS732 |
C | HOH1211 |
D | HIS463 |
D | TPP1004 |
D | DW31005 |
site_id | AD9 |
Number of Residues | 6 |
Details | binding site for residue DW3 D 1001 |
Chain | Residue |
C | TPP1004 |
C | DW31005 |
D | PHE689 |
D | PHE692 |
D | HIS732 |
D | HOH1186 |
site_id | AE1 |
Number of Residues | 7 |
Details | binding site for residue P6G D 1002 |
Chain | Residue |
D | SER305 |
D | LEU319 |
D | ALA320 |
D | VAL332 |
D | SER336 |
D | ARG713 |
D | HOH1160 |
site_id | AE2 |
Number of Residues | 5 |
Details | binding site for residue MG D 1003 |
Chain | Residue |
D | ASP360 |
D | ASN393 |
D | VAL395 |
D | TPP1004 |
D | HOH1142 |
site_id | AE3 |
Number of Residues | 25 |
Details | binding site for residue TPP D 1004 |
Chain | Residue |
C | GLN619 |
C | LEU662 |
C | GLU664 |
C | GLN688 |
C | PHE692 |
C | DW31006 |
D | HIS263 |
D | ARG264 |
D | SER324 |
D | HIS325 |
D | LEU326 |
D | GLY359 |
D | ASP360 |
D | SER361 |
D | ALA362 |
D | GLN366 |
D | ASN393 |
D | VAL395 |
D | GLY396 |
D | HIS463 |
D | MG1003 |
D | HOH1142 |
D | HOH1169 |
D | HOH1207 |
D | HOH1332 |
site_id | AE4 |
Number of Residues | 6 |
Details | binding site for residue DW3 D 1005 |
Chain | Residue |
C | DW31006 |
D | HIS263 |
D | TYR300 |
D | HIS301 |
D | SER324 |
D | HOH1301 |