6KIJ
Crystal structure of yedK with ssDNA containing an abasic site
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (B) | SOS response-associated protein | polymer | 227 | 25606.9 | 1 | UniProt (A0A2S5ZH06) Pfam (PF02586) UniProt (by SIFTS) (P76318) | Escherichia coli | E.coli yedK |
| 2 | B (A) | DNA (5'-D(*GP*AP*TP*TP*CP*GP*TP*CP*G)-3') | polymer | 9 | 2746.8 | 1 | Escherichia coli | ||
| 3 | C (B) | PENTANE-3,4-DIOL-5-PHOSPHATE | non-polymer | 200.1 | 1 | Chemie (PED) | |||
| 4 | D (B) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 5 | E, F (B, A) | water | water | 18.0 | 323 | Chemie (HOH) |
Sequence modifications
B: 2 - 222 (UniProt: A0A2S5ZH06)
| PDB | External Database | Details |
|---|---|---|
| Leu 223 | - | expression tag |
| Glu 224 | - | expression tag |
| Val 225 | - | expression tag |
| Leu 226 | - | expression tag |
| Phe 227 | - | expression tag |
| Gln 228 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 28353.7 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 292.2 | |
| All* | Total formula weight | 28645.9 |
