6KAD
Cryo-EM structure of the C2S2M2L2-type PSII-LHCII supercomplex from Chlamydomonas reihardtii
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, BA, CB, DA, EA... (1, 6, Y, 0, 7...) | Chlorophyll a-b binding protein, chloroplastic | polymer | 256 | 27591.3 | 6 | UniProt (Q93VE0) Pfam (PF00504) | Chlamydomonas reinhardtii | |
| 2 | B, C, E, FA, GA... (2, 3, 5, N, 8...) | Chlorophyll a-b binding protein, chloroplastic | polymer | 257 | 27405.0 | 8 | UniProt (Q93WL4) Pfam (PF00504) | Chlamydomonas reinhardtii | |
| 3 | D, IA, M, PA (4, G, q, g) | Chlorophyll a-b binding protein, chloroplastic | polymer | 249 | 26675.3 | 4 | UniProt (Q93WE0) Pfam (PF00504) | Chlamydomonas reinhardtii | |
| 4 | G, JA (A, a) | Photosystem II protein D1 | polymer | 352 | 39066.3 | 2 | UniProt (P07753) Pfam (PF00124) | Chlamydomonas reinhardtii | PSII D1 protein,32 kDa thylakoid membrane protein,Photosystem II Q(B) protein |
| 5 | H, KA (B, b) | Photosystem II CP47 reaction center protein | polymer | 508 | 56159.8 | 2 | UniProt (P37255) Pfam (PF00421) | Chlamydomonas reinhardtii | PSII 47 kDa protein,Protein CP-47 |
| 6 | I, LA (C, c) | Photosystem II CP43 reaction center protein | polymer | 461 | 50680.7 | 2 | UniProt (P10898) Pfam (PF00421) | Chlamydomonas reinhardtii | PSII 43 kDa protein,Protein CP-43,Protein P6 |
| 7 | J, MA (D, d) | Photosystem II D2 protein | polymer | 352 | 39474.0 | 2 | UniProt (P06007) Pfam (PF00124) | Chlamydomonas reinhardtii | PSII D2 protein,Photosystem Q(A) protein |
| 8 | K, NA (E, e) | Cytochrome b559 subunit alpha | polymer | 82 | 9312.6 | 2 | UniProt (P48268) Pfam (PF00283) Pfam (PF00284) | Chlamydomonas reinhardtii | PSII reaction center subunit V |
| 9 | L, OA (F, f) | Cytochrome b559 subunit beta | polymer | 44 | 4986.0 | 2 | UniProt (Q08363) Pfam (PF00283) | Chlamydomonas reinhardtii | PSII reaction center subunit VI |
| 10 | N, QA (H, h) | Photosystem II reaction center protein H | polymer | 88 | 9445.1 | 2 | UniProt (P22666) Pfam (PF00737) | Chlamydomonas reinhardtii | PSII-H,Photosystem II 8 kDa phosphoprotein |
| 11 | O, RA (I, i) | Photosystem II reaction center protein I | polymer | 37 | 4245.0 | 2 | UniProt (P59763) Pfam (PF02532) | Chlamydomonas reinhardtii | PSII-I,PSII 4.8 kDa protein |
| 12 | P, SA (J, j) | Photosystem II reaction center protein J | polymer | 42 | 4291.0 | 2 | UniProt (O19930) Pfam (PF01788) | Chlamydomonas reinhardtii | PSII-J |
| 13 | Q, TA (K, k) | Photosystem II reaction center protein K | polymer | 46 | 5062.1 | 2 | UniProt (P18263) Pfam (PF02533) | Chlamydomonas reinhardtii | PSII-K |
| 14 | R, UA (L, l) | Photosystem II reaction center protein L | polymer | 38 | 4431.2 | 2 | UniProt (P32974) Pfam (PF02419) | Chlamydomonas reinhardtii | PSII-L |
| 15 | S, VA (M, m) | Photosystem II reaction center protein M | polymer | 34 | 3762.4 | 2 | UniProt (P92277) Pfam (PF05151) | Chlamydomonas reinhardtii | PSII-M |
| 16 | FB, U (O, o) | Oxygen-evolving enhancer protein 1, chloroplastic | polymer | 291 | 30557.7 | 2 | UniProt (P12853) | Chlamydomonas reinhardtii | OEE1 |
| 17 | EB, V (R, r) | Chlorophyll a-b binding protein CP29 | polymer | 280 | 29970.8 | 2 | UniProt (Q93WD2) | Chlamydomonas reinhardtii | Lhcbm4 |
| 18 | W, XA (S, s) | Chlorophyll a-b binding protein, chloroplastic | polymer | 289 | 30742.8 | 2 | UniProt (Q9FEK6) Pfam (PF00504) | Chlamydomonas reinhardtii | |
| 19 | X, YA (T, t) | Photosystem II reaction center protein T | polymer | 31 | 3639.4 | 2 | UniProt (P37256) Pfam (PF01405) | Chlamydomonas reinhardtii | PSII-T |
| 20 | Y, ZA (V, v) | Photosystem II reaction center protein Ycf12 | polymer | 33 | 3333.1 | 2 | Chlamydomonas reinhardtii | ||
| 21 | AB, Z (W, w) | Photosystem II reaction center W protein, chloroplastic | polymer | 115 | 12155.1 | 2 | UniProt (Q9SPI9) | Chlamydomonas reinhardtii | PSII 6.1 kDa protein |
| 22 | AA, BB (X, x) | 4.1 kDa photosystem II subunit | polymer | 101 | 9894.7 | 2 | UniProt (A8I846) Pfam (PF06596) | Chlamydomonas reinhardtii | |
| 23 | CA, DB (Z, z) | Photosystem II reaction center protein Z | polymer | 62 | 6565.9 | 2 | UniProt (P92276) Pfam (PF01737) | Chlamydomonas reinhardtii | PSII-Z |
| 24 | AD, AM, AN, BF, BK... (3, 0, 7, 6, R...) | CHLOROPHYLL B | non-polymer | 907.5 | 122 | Chemie (CHL) | |||
| 25 | AC, AF, AH, AK, AL... (2, 6, C, R, S...) | CHLOROPHYLL A | non-polymer | 893.5 | 254 | Chemie (CLA) | |||
| 26 | AE, AO, BO, CL, DL... (4, 8, S, q, s...) | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 568.9 | 42 | Chemie (LUT) PubChem (24728610) PubChem (25202165) PubChem (44481270) PubChem (46835684) PubChem (177565809) PubChem (177696530) PubChem (25245095) PubChem (53477744) PubChem (53477774) PubChem (53477760) PubChem (57922343) PubChem (31380) PubChem (448437) PubChem (89305995) PubChem (91007743) PubChem (91330154) PubChem (91467158) PubChem (5281243) PubChem (93535598) PubChem (94424894) PubChem (100935514) PubChem (101351907) PubChem (101351906) PubChem (5368396) PubChem (131801656) PubChem (12085680) PubChem (139335388) PubChem (90820720) PubChem (91240120) PubChem (91519940) PubChem (181579) PubChem (441664) PubChem (162679657) PubChem (162945700) PubChem (162945708) PubChem (93971688) PubChem (93971689) PubChem (93971690) PubChem (93971691) PubChem (94424892) PubChem (94424893) PubChem (101351905) PubChem (101351908) PubChem (101351909) PubChem (101351910) PubChem (101727094) PubChem (102093134) PubChem (102514741) PubChem (175679236) PubChem (175679086) PubChem (6325550) PubChem (125183271) PubChem (125183272) PubChem (125183273) PubChem (125183613) PubChem (125183614) PubChem (6433159) PubChem (126970006) PubChem (131801655) PubChem (10210008) PubChem (10257404) PubChem (139595700) PubChem (12359017) PubChem (152743345) PubChem (156583347) PubChem (159139983) PubChem (162945701) PubChem (162945702) PubChem (162945703) PubChem (162945704) PubChem (162945705) PubChem (162945706) PubChem (162945707) PubChem (162945709) PubChem (16061195) PubChem (16061196) PubChem (16061204) PubChem (169423521) PubChem (169954357) PubChem (172748694) | |||
| 27 | AW, BE, CO, HQ, ID... (y, 4, 8, q, 3...) | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 20 | Chemie (XAT) PubChem (24970201) PubChem (46936684) PubChem (53477762) PubChem (51346155) PubChem (92096) PubChem (98049827) PubChem (101341889) PubChem (101341891) PubChem (6852159) PubChem (126456015) PubChem (12358664) PubChem (179930) PubChem (155293357) PubChem (162964874) PubChem (448438) PubChem (98049828) PubChem (101341888) PubChem (101341890) PubChem (101341892) PubChem (101341893) PubChem (101341894) PubChem (101341895) PubChem (163187351) PubChem (177696491) PubChem (5282218) PubChem (5315242) PubChem (125183415) PubChem (125183416) PubChem (125183417) PubChem (6384269) PubChem (6442428) PubChem (129888894) PubChem (9851662) PubChem (137331554) PubChem (12358665) PubChem (12358669) PubChem (152743429) PubChem (162964869) PubChem (162964870) PubChem (162964871) PubChem (162964872) PubChem (162964873) PubChem (162964875) PubChem (162964876) PubChem (163186889) PubChem (169544055) PubChem (171036315) PubChem (172817291) | |||
| 28 | BW, CE, DO, EL, HV... (y, 4, 8, S, s...) | (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL | non-polymer | 600.9 | 22 | Chemie (NEX) PubChem (177697037) PubChem (52948899) PubChem (21158515) PubChem (159749) PubChem (5281247) PubChem (101866355) PubChem (6384259) PubChem (162910894) PubChem (162910891) PubChem (162910895) PubChem (101052392) PubChem (101866356) PubChem (101866357) PubChem (102060371) PubChem (4481261) PubChem (5282217) PubChem (5320120) PubChem (10908146) PubChem (139033583) PubChem (12358959) PubChem (162910892) PubChem (162910893) PubChem (162910896) PubChem (169502056) PubChem (172012198) | |||
| 29 | AJ, BI, CI, CW, DE... (G, D, y, 4, L...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 32 | Chemie (LHG) PubChem (46936292) PubChem (65144) PubChem (73416066) PubChem (13305396) PubChem (446440) PubChem (9547104) PubChem (11846227) PubChem (138986743) | |||
| 30 | KQ, QF (a, A) | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 2 | Chemie (OEX) | |||
| 31 | LQ, RF (a, A) | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) PubChem (27284) | |||
| 32 | MQ, SF (a, A) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) PubChem (312) | |||
| 33 | QQ, RQ, WF, XF (a, A) | PHEOPHYTIN A | non-polymer | 871.2 | 4 | Chemie (PHO) | |||
| 34 | BJ, FS, GS, HS, IS... (H, c, C, b, B...) | BETA-CAROTENE | non-polymer | 536.9 | 20 | Chemie (BCR) PubChem (21672398) PubChem (46783370) PubChem (46846294) PubChem (176490061) PubChem (177696266) PubChem (54603957) PubChem (54612003) PubChem (5280489) PubChem (92863345) PubChem (124919640) PubChem (573) PubChem (86765360) PubChem (91827292) PubChem (146673260) PubChem (152743364) PubChem (160505766) PubChem (92863346) PubChem (92863347) PubChem (92863348) PubChem (100990628) PubChem (101525094) PubChem (101525095) PubChem (5315709) PubChem (5353436) PubChem (5356616) PubChem (124919639) PubChem (5927371) PubChem (6477957) PubChem (129651951) PubChem (132274419) PubChem (9828626) PubChem (10256668) PubChem (12305639) PubChem (12305640) PubChem (12305642) PubChem (12305644) PubChem (12305647) PubChem (12305652) PubChem (145925599) PubChem (159562859) PubChem (172654026) PubChem (172878405) PubChem (173398668) | |||
| 35 | AG, AT, GI, PR, RR... (A, d, D, b, a...) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 8 | Chemie (SQD) PubChem (25147486) PubChem (25235342) PubChem (42607399) PubChem (159321) PubChem (481096) PubChem (134765349) PubChem (102201395) PubChem (5459390) PubChem (9810997) PubChem (9918745) PubChem (10219110) PubChem (10373133) PubChem (14463145) | |||
| 36 | BG, CJ, EI, FI, GL... (A, H, D, S, s...) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 14 | Chemie (LMG) | |||
| 37 | JS, KS, LS, NS, OS... (c, C) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 10 | Chemie (DGD) PubChem (24865462) PubChem (50904896) PubChem (24865463) PubChem (46936671) PubChem (53480668) PubChem (447899) PubChem (4629344) PubChem (15991538) PubChem (154573294) PubChem (448441) PubChem (171123158) PubChem (134746152) PubChem (140529801) | |||
| 38 | QS, WH (d, D) | BICARBONATE ION | non-polymer | 61.0 | 2 | Chemie (BCT) PubChem (769) | |||
| 39 | AI, US (D, d) | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 2 | Chemie (PL9) PubChem (23304240) PubChem (21881166) PubChem (20286) PubChem (5375177) PubChem (6323474) PubChem (6325820) PubChem (6433402) | |||
| 40 | BT, HI (f, F) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 2 | Chemie (HEM) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 58 |
| Total formula weight | 1207041.4 | |
| Non-Polymers* | Number of molecules | 560 |
| Total formula weight | 454734.0 | |
| All* | Total formula weight | 1661775.4 |
