6JOE
Crystal structure of TrmD from Pseudomonas aeruginosa in complex with active-site inhibitor
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | tRNA (guanine-N(1)-)-methyltransferase | polymer | 269 | 30336.2 | 2 | UniProt (Q02RL6) Pfam (PF01746) In PDB | Pseudomonas aeruginosa UCBPP-PA14 | M1G-methyltransferase,tRNA [GM37] methyltransferase |
2 | A | ~{N}-[[4-[(4-azanylpiperidin-1-yl)methyl]phenyl]methyl]-4-oxidanylidene-3~{H}-thieno[2,3-d]pyrimidine-5-carboxamide | non-polymer | 397.5 | 1 | Chemie (BWR) | |||
3 | A | PHOSPHATE ION | non-polymer | 95.0 | 1 | Chemie (PO4) | |||
4 | B | S-ADENOSYLMETHIONINE | non-polymer | 398.4 | 1 | Chemie (SAM) | |||
5 | water | water | 18.0 | 191 | Chemie (HOH) |
Sequence modifications
A, B: 5 - 250 (UniProt: Q02RL6)
PDB | External Database | Details |
---|---|---|
Met -18 | - | initiating methionine |
His -17 | - | expression tag |
His -16 | - | expression tag |
His -15 | - | expression tag |
His -14 | - | expression tag |
His -13 | - | expression tag |
His -12 | - | expression tag |
Ser -11 | - | expression tag |
Ser -10 | - | expression tag |
Gly -9 | - | expression tag |
Val -8 | - | expression tag |
Asp -7 | - | expression tag |
Leu -6 | - | expression tag |
Gly -5 | - | expression tag |
Thr -4 | - | expression tag |
Glu -3 | - | expression tag |
Asn -2 | - | expression tag |
Leu -1 | - | expression tag |
Tyr 0 | - | expression tag |
Phe 1 | - | expression tag |
Gln 2 | - | expression tag |
Ser 3 | - | expression tag |
Met 4 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 60672.3 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 890.9 | |
All* | Total formula weight | 61563.2 |