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6JOE

Crystal structure of TrmD from Pseudomonas aeruginosa in complex with active-site inhibitor

Functional Information from GO Data
ChainGOidnamespacecontents
A0002939biological_processtRNA N1-guanine methylation
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006400biological_processtRNA modification
A0008033biological_processtRNA processing
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
A0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
B0002939biological_processtRNA N1-guanine methylation
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006400biological_processtRNA modification
B0008033biological_processtRNA processing
B0008168molecular_functionmethyltransferase activity
B0032259biological_processmethylation
B0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues17
Detailsbinding site for residue BWR A 301
ChainResidue
ALEU92
ATYR141
AVAL142
ALEU143
AGLY145
AGLY146
APRO149
AHOH409
BASP182
ASER93
APRO94
AARG119
ATYR120
AGLU121
ASER137
AILE138
AGLY139

site_idAC2
Number of Residues5
Detailsbinding site for residue PO4 A 302
ChainResidue
AARG43
AARG49
AGLN51
ATRP222
AGLU223

site_idAC3
Number of Residues21
Detailsbinding site for residue SAM B 301
ChainResidue
AASP174
ASER175
AASP182
AHIS185
AHOH433
BTYR91
BLEU92
BSER93
BPRO94
BGLN95
BGLY118
BTYR120
BGLU121
BSER137
BILE138
BGLY139
BTYR141
BLEU143
BGLY145
BGLY146
BPRO149

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00605
ChainResidueDetails
AGLY118
AILE138
BGLY118
BILE138

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PDB entries from 2024-10-09

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