6JO0
Crystal structure of the DTS-motif rhodopsin from Phaeocystis globosa virus 12T
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | VirRDTS | polymer | 232 | 28087.3 | 1 | UniProt (G8DI69) UniProt (by SIFTS) (A0ACD6B8L3) | Phaeocystis globosa virus 12T | |
| 2 | B (A) | RETINAL | non-polymer | 284.4 | 1 | Chemie (RET) PubChem (1070) PubChem (638015) PubChem (5353924) PubChem (6436079) PubChem (6436082) PubChem (11426127) PubChem (12227253) PubChem (12227254) PubChem (12227256) PubChem (12227257) PubChem (12227258) PubChem (12227259) PubChem (12227269) PubChem (12227270) PubChem (12227271) PubChem (23254473) PubChem (177675058) PubChem (5280490) PubChem (5381765) PubChem (87082476) PubChem (87110449) PubChem (87110609) PubChem (88398773) PubChem (88407543) PubChem (134688327) PubChem (140510408) PubChem (145826762) PubChem (169423542) PubChem (172878320) | |||
| 3 | C, D, E, F, G... (A) | N-OCTANE | non-polymer | 114.2 | 6 | Chemie (OCT) PubChem (356) | |||
| 4 | I (A) | PHOSPHATE ION | non-polymer | 95.0 | 1 | Chemie (PO4) PubChem (1061) | |||
| 5 | J, K, L, M, N (A) | HEXANE | non-polymer | 86.2 | 5 | Chemie (HEX) PubChem (8058) | |||
| 6 | O (A) | DECANE | non-polymer | 142.3 | 1 | Chemie (D10) PubChem (15600) | |||
| 7 | P (A) | DODECANE | non-polymer | 170.3 | 1 | Chemie (D12) PubChem (8182) PubChem (5359624) | |||
| 8 | Q, R, S (A) | nonane | non-polymer | 128.3 | 3 | Chemie (DD9) PubChem (8141) | |||
| 9 | T (A) | (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate | non-polymer | 356.5 | 1 | Chemie (OLB) | |||
| 10 | U (A) | water | water | 18.0 | 92 | Chemie (HOH) |
Sequence modifications
A: 1 - 225 (UniProt: G8DI69)
| PDB | External Database | Details |
|---|---|---|
| Gly -6 | - | expression tag |
| Ser -5 | - | expression tag |
| Ser -4 | - | expression tag |
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| Ser -1 | - | expression tag |
| Gly 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 28087.3 | |
| Non-Polymers* | Number of molecules | 19 |
| Total formula weight | 2549.6 | |
| All* | Total formula weight | 30636.8 |
