Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6JLU

Structure of PSII-FCP supercomplex from a centric diatom Chaetoceros gracilis at 3.02 angstrom resolution

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, Z
(A, a)		PsbApolymer35939575.12Chaetoceros gracilis
2AA, B
(B, b)		PsbBpolymer50956475.32Chaetoceros gracilis
3BA, C
(C, c)		PsbCpolymer45049357.32Chaetoceros gracilis
4CA, D
(D, d)		PsbDpolymer34137983.32Chaetoceros gracilis
5DA, E
(E, e)		PsbEpolymer799062.12Chaetoceros gracilis
6EA, F
(F, f)		PsbFpolymer323652.42Chaetoceros gracilis
7FA, G
(G, g)		Psb31polymer17918733.32Chaetoceros gracilis
8GA, H
(H, h)		Photosystem II reaction center protein Hpolymer657188.52UniProt (B7XBY7)Chaetoceros gracilisPSII-H
9HA, I
(I, i)		PsbIpolymer343940.72Chaetoceros gracilis
10IA, J
(J, j)		PsbJpolymer343487.12Chaetoceros gracilis
11JA, K
(K, k)		PsbKpolymer374225.12Chaetoceros gracilis
12KA, L
(L, l)		PsbLpolymer384367.12Chaetoceros gracilis
13LA, M
(M, m)		PsbMpolymer414358.02Chaetoceros gracilis
14MA, N
(N, n)		Psb34polymer302571.22Chaetoceros gracilis
15NA, O
(O, o)		Extrinsic protein in photosystem IIpolymer24926820.42UniProt (B6ZHE8)Chaetoceros gracilis
16OA, P
(P, p)		FCP-Dpolymer22624667.82Chaetoceros gracilis
17PA, Q
(Q, q)		Extrinsic protein in photosystem IIpolymer21122585.42UniProt (B6ZHE9)Chaetoceros gracilis
18QA, R
(R, r)		PsbGpolymer736230.72Chaetoceros gracilis
19RA, S
(T, t)		PsbTpolymer313711.52Chaetoceros gracilis
20SA, T
(U, u)		Extrinsic protein in photosystem IIpolymer9310167.52UniProt (B6ZHF0)Chaetoceros gracilis
21TA, U
(V, v)		Cytochrome c-550polymer13714920.82UniProt (B6ZHF4)Chaetoceros gracilisCytochrome c550
22UA, V
(W, w)		PsbWpolymer515720.52Chaetoceros gracilis
23VA, W
(X, x)		Photosystem II reaction center X proteinpolymer353502.22UniProt (B6ZHF2)Chaetoceros gracilis
24WA, X
(Y, y)		PsbYpolymer333634.32Chaetoceros gracilis
25XA, Y
(Z, z)		PsbZpolymer616417.52Chaetoceros gracilis
26IB, YA
(0, 10)		FCP-Epolymer17818781.82Chaetoceros gracilis
27AB, BB, CB, DB, EB...
(1, 2, 3, 4, 5...)		FCP-Apolymer17218988.816Chaetoceros gracilis
28HB, RB
(9, 19)		FCP-Fpolymer16618214.72Chaetoceros gracilis
29OF, SB
(a, A)		CA-MN4-O5 CLUSTERnon-polymer339.82Chemie (OEX)
30PF, TB
(a, A)		FE (II) IONnon-polymer55.82Chemie (FE2)
PubChem (27284)
31AE, AG, AH, AK, AM...
(D, b, c, 0, 3...)		CHLOROPHYLL Anon-polymer893.5230Chemie (CLA)
32SF, TH, WB, YD
(a, d, A, D)		PHEOPHYTIN Anon-polymer871.24Chemie (PHO)
33BI, DI, GE, HJ, IE...
(f, h, F, y, H...)		BETA-CAROTENEnon-polymer536.920Chemie (BCR)
PubChem (573)
PubChem (21672398)
PubChem (176490061)
PubChem (177696266)
PubChem (46783370)
PubChem (46846294)
PubChem (54603957)
PubChem (54612003)
PubChem (86765360)
PubChem (5315709)
PubChem (5280489)
PubChem (91827292)
PubChem (92863345)
PubChem (5353436)
PubChem (5356616)
PubChem (5927371)
PubChem (124919640)
PubChem (92863346)
PubChem (92863347)
PubChem (92863348)
PubChem (6477957)
PubChem (100990628)
PubChem (101525094)
PubChem (101525095)
PubChem (9828626)
PubChem (10256668)
PubChem (12305639)
PubChem (12305640)
PubChem (12305642)
PubChem (12305644)
PubChem (12305647)
PubChem (12305652)
PubChem (146673260)
PubChem (152743364)
PubChem (124919639)
PubChem (160505766)
PubChem (129651951)
PubChem (132274419)
PubChem (145925599)
PubChem (159562859)
PubChem (172654026)
PubChem (172878405)
PubChem (173398668)
34CC, FI, II, NE, PQ...
(A, i, l, L, 10...)		1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLnon-polymer795.110Chemie (SQD)
PubChem (25147486)
PubChem (25235342)
PubChem (42607399)
PubChem (159321)
PubChem (481096)
PubChem (5459390)
PubChem (102201395)
PubChem (134765349)
PubChem (9810997)
PubChem (9918745)
PubChem (10219110)
PubChem (10373133)
PubChem (14463145)
35AC, CE, WF, XH
(A, D, a, d)		2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONEnon-polymer749.24Chemie (PL9)
PubChem (23304240)
PubChem (20286)
PubChem (21881166)
PubChem (5375177)
PubChem (6323474)
PubChem (6325820)
PubChem (6433402)
36AJ, BC, DE, EF, EJ...
(p, A, D, P, w...)		1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLEnon-polymer723.022Chemie (LHG)
PubChem (46936292)
PubChem (446440)
PubChem (73416066)
PubChem (65144)
PubChem (9547104)
PubChem (13305396)
PubChem (11846227)
PubChem (138986743)
37BK, CI, CK, DF, DJ...
(0, f, 1, P, w...)		1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDEnon-polymer787.236Chemie (LMG)
38EI, GJ, HR, JE, JF...
(h, w, 11, H, W...)		DIGALACTOSYL DIACYL GLYCEROL (DGDG)non-polymer949.314Chemie (DGD)
PubChem (24865462)
PubChem (24865463)
PubChem (50904896)
PubChem (53480668)
PubChem (46936671)
PubChem (448441)
PubChem (447899)
PubChem (4629344)
PubChem (15991538)
PubChem (154573294)
PubChem (171123158)
PubChem (134746152)
PubChem (140529801)
39AD, VG
(C, c)		CHLORIDE IONnon-polymer35.52Chemie (CL)
PubChem (312)
40RH, WD
(d, D)		BICARBONATE IONnon-polymer61.02Chemie (BCT)
PubChem (769)
41AI, CJ, FE, GF
(e, v, E, V)		PROTOPORPHYRIN IX CONTAINING FEnon-polymer616.54Chemie (HEM)
42AV, CT, DP, DR, FN...
(17, 14, 8, 11, 5...)		Chlorophyll c1non-polymer610.922Chemie (KC1)
43AF, AL, AQ, AS, AU...
(P, 2, 10, 13, 16...)		(3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetatenon-polymer658.9124Chemie (A86)
PubChem (21776532)
PubChem (91530)
PubChem (46781664)
PubChem (541529)
PubChem (59370904)
PubChem (59438846)
PubChem (177442568)
PubChem (89808300)
PubChem (90784335)
PubChem (88873479)
PubChem (91266697)
PubChem (5281239)
PubChem (101608998)
PubChem (102200897)
PubChem (5364094)
PubChem (124298579)
PubChem (124298578)
PubChem (124298576)
PubChem (125183403)
PubChem (9961263)
PubChem (102200898)
PubChem (102232483)
PubChem (10009558)
PubChem (123264561)
PubChem (124298577)
PubChem (140222158)
PubChem (15559432)
PubChem (15559433)
PubChem (15559434)
PubChem (15559435)
PubChem (162962337)
PubChem (163285374)
PubChem (138115313)
PubChem (140222160)
PubChem (154828419)
PubChem (162962338)
PubChem (162962339)
PubChem (162962340)
PubChem (162962341)
PubChem (172812670)
44BF, XI
(P, p)		(3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diolnon-polymer582.92Chemie (DD6)
PubChem (72964028)
PubChem (14160123)
PubChem (102007228)
PubChem (10817096)
PubChem (6449888)
PubChem (10579169)
PubChem (11621213)
PubChem (172636470)
PubChem (137349167)
PubChem (162909187)
PubChem (172781022)
45AN, AP, AR, BW, CN...
(5, 8, 11, 19, 2...)		Chlorophyll c2non-polymer608.936Chemie (KC2)
46IW
(Z)		waterwater18.01Chemie (HOH)
Sequence modifications
O, o: 89 - 337 (UniProt: B6ZHE8)
PDBExternal DatabaseDetails
Ser 185Asn 155conflict
Glu 336Asp 306conflict
Q, q: 1 - 211 (UniProt: B6ZHE9)
PDBExternal DatabaseDetails
Val 30Ile 30conflict
Ala 34Gly 34conflict
Ile 70Val 70conflict
Ser 110Asn 110conflict
Gly 133Ala 133conflict
U, u: 11 - 103 (UniProt: B6ZHF0)
PDBExternal DatabaseDetails
Ile 33Val 81conflict
Ser 60Ala 108conflict
V, v: 1 - 137 (UniProt: B6ZHF4)
PDBExternal DatabaseDetails
Asn 70Ser 96conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains70
Total formula weight1124524.8
Non-Polymers*Number of molecules536
Total formula weight409888.2
All*Total formula weight1534413.1
*Water molecules are not included.

253091

PDB entries from 2026-05-06

PDB statisticsPDBj update infoContact PDBjnumon