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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6I7O

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1BQ, YQ25S ribosomal RNApolymer33961097493.92GenBank (834774822)Saccharomyces cerevisiae
2BR, YR5S ribosomal RNApolymer12138951.12GenBank (1329886537)Saccharomyces cerevisiae
3BS, YS5.8S ribosomal RNApolymer15750376.82GenBank (1489318609)Saccharomyces cerevisiae
4AW, XW60S ribosomal protein L2-Apolymer25227217.32UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L5,Large ribosomal subunit protein uL2-A,RP8,YL6
5BA, YA60S ribosomal protein L3polymer38643719.62UniProt (P14126)
Pfam (PF00297)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
6BE, YE60S ribosomal protein L4-Apolymer36139027.92UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L2,Large ribosomal subunit protein uL4-A,RP2,YL2
7BI, YI60S ribosomal protein L5polymer29433415.42UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
8BM, YM60S ribosomal protein L6-Apolymer17620000.62UniProt (Q02326)
Pfam (PF01159)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L17,Large ribosomal subunit protein eL6-A,RP18,YL16
9BO, YO60S ribosomal protein L7-Apolymer22325341.52UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L6,Large ribosomal subunit protein uL30-A,RP11,YL8
10AA, XA60S ribosomal protein L8-Apolymer23125656.82UniProt (P17076)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
11AD, XD60S ribosomal protein L9-Apolymer19021491.92UniProt (P05738)
Pfam (PF00347)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L8,Large ribosomal subunit protein uL6-A,RP24,YL11
12BD, YD60S ribosomal protein L10polymer22125410.52UniProt (P41805)
Pfam (PF00252)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
13AG, XG60S ribosomal protein L11-Bpolymer16919266.12UniProt (Q3E757)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L16,Large ribosomal subunit protein uL5-B,RP39,YL22
14AJ, XJ60S ribosomal protein L13-Apolymer19421956.32UniProt (Q12690)
Pfam (PF01294)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL13-A
15AM, XM60S ribosomal protein L14-Apolymer13715063.92UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL14-A
16AQ, XQ60S ribosomal protein L15-Apolymer20324351.22UniProt (P05748)
Pfam (PF00827)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
17AU, XU60S ribosomal protein L16-Apolymer19722029.02UniProt (P26784)
Pfam (PF00572)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
182, 2b18S ribosomal RNApolymer1800579761.92GenBank (874346701)Saccharomyces cerevisiae
19P, Pb40S ribosomal protein S0-Apolymer20622811.12UniProt (P32905)
Pfam (PF00318)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Nucleic acid-binding protein NAB1A,Small ribosomal subunit protein uS2-A
20Q, Qb40S ribosomal protein S1-Apolymer21624498.42UniProt (P33442)
Pfam (PF01015)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP10A,Small ribosomal subunit protein eS1-A
21R, Rb40S ribosomal protein S2polymer21723213.02UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Omnipotent suppressor protein SUP44,RP12,S4,Small ribosomal subunit protein uS5,YS5
22A, Ab40S ribosomal protein S3polymer22324702.82UniProt (P05750)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP13,Small ribosomal subunit protein uS3,YS3
23S, Sb40S ribosomal protein S4-Apolymer26029338.12UniProt (P0CX35)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP5,S7,Small ribosomal subunit protein eS4-A,YS6
24B, Bb40S ribosomal protein S5polymer20622908.32UniProt (P26783)
Pfam (PF00177)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP14,S2,Small ribosomal subunit protein uS7,YS8
25T, Tb40S ribosomal protein S6-Apolymer21824966.02UniProt (P0CX37)
Pfam (PF01092)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP9,S10,Small ribosomal subunit protein eS6-A,YS4
26U, Ub40S ribosomal protein S7-Apolymer18521071.62UniProt (P26786)
Pfam (PF01251)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP30,RP40,Small ribosomal subunit protein eS7-A
27V, Vb40S ribosomal protein S8-Apolymer20022537.82UniProt (P0CX39)
Pfam (PF01201)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP19,S14,Small ribosomal subunit protein eS8-A,YS9
28W, Wb40S ribosomal protein S9-Apolymer18521210.72UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11
29C, Cb40S ribosomal protein S10-Apolymer9211042.62UniProt (Q08745)
Pfam (PF03501)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS10-A
30X, Xb40S ribosomal protein S11-Apolymer14616588.52UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP41,S18,Small ribosomal subunit protein uS17-A,YS12
31D, Db40S ribosomal protein S12polymer12413327.32UniProt (P48589)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS12
32Y, Yb40S ribosomal protein S13polymer15016928.72UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)
In PDB		Saccharomyces cerevisiae (Baker's yeast)S27a,Small ribosomal subunit protein uS15,YS15
33Z, Zb40S ribosomal protein S14-Bpolymer12813560.52UniProt (P39516)
Pfam (PF00411)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP59B,Small ribosomal subunit protein uS11-B
34E, Eb40S ribosomal protein S15polymer11913421.72UniProt (Q01855)
Pfam (PF00203)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RIG protein,RP52,S21,Small ribosomal subunit protein uS19,YS21
35F, Fb40S ribosomal protein S16-Apolymer14115659.22UniProt (P0CX51)
Pfam (PF00380)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP61R,Small ribosomal subunit protein uS9-A
36G, Gb40S ribosomal protein S17-Apolymer12514268.52UniProt (P02407)
Pfam (PF00833)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP51A,Small ribosomal subunit protein eS17-A
37H, Hb40S ribosomal protein S18-Apolymer14516940.42UniProt (P0CX55)
Pfam (PF00416)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein uS13-A
38I, Ib40S ribosomal protein S19-Apolymer14315810.92UniProt (P07280)
Pfam (PF01090)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A
39J, Jb40S ribosomal protein S20polymer10111476.52UniProt (P38701)
Pfam (PF00338)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein uS10
40a, ab40S ribosomal protein S21-Apolymer879758.82UniProt (P0C0V8)
Pfam (PF01249)
In PDB		Saccharomyces cerevisiae (Baker's yeast)S26,Small ribosomal subunit protein eS21-A,YS25
41b, bb40S ribosomal protein S22-Apolymer12914518.92UniProt (P0C0W1)
Pfam (PF00410)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22
42c, cb40S ribosomal protein S23-Apolymer14415942.72UniProt (P0CX29)
Pfam (PF00164)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP37,S28,Small ribosomal subunit protein uS12-A,YS14
43d, db40S ribosomal protein S24-Apolymer13415231.62UniProt (P0CX31)
Pfam (PF01282)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP50,Small ribosomal subunit protein eS24-A
44K, Kb40S ribosomal protein S25-Apolymer697930.32UniProt (Q3E792)
Pfam (PF03297)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP45,S31,Small ribosomal subunit protein eS25-A,YS23
45e, eb40S ribosomal protein S26-Bpolymer9711023.02UniProt (P39939)
Pfam (PF01283)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS26-B
46f, fb40S ribosomal protein S27-Apolymer818762.22UniProt (P35997)
Pfam (PF01667)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP61,Small ribosomal subunit protein eS27-A,YS20
47L, Lb40S ribosomal protein S28-Apolymer637116.32UniProt (Q3E7X9)
Pfam (PF01200)
In PDB		Saccharomyces cerevisiae (Baker's yeast)S33,Small ribosomal subunit protein eS28-A,YS27
48M, Mb40S ribosomal protein S29-Apolymer536335.32UniProt (P41057)
Pfam (PF00253)
In PDB		Saccharomyces cerevisiae (Baker's yeast)S36,Small ribosomal subunit protein uS14-A,YS29
49g, gb40S ribosomal protein S30-Apolymer606779.12UniProt (P0CX33)
Pfam (PF04758)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS30-A
50N, NbUbiquitin-40S ribosomal protein S31polymer738329.92UniProt (P05759)
Pfam (PF01599)
In PDB		Saccharomyces cerevisiae (Baker's yeast)
51O, ObGuanine nucleotide-binding protein subunit beta-like proteinpolymer31334151.42UniProt (P38011)
Pfam (PF00400)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Receptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1,Small ribosomal subunit protein RACK1
52AX, XX60S ribosomal protein L17-Apolymer18420589.52UniProt (P05740)
Pfam (PF00237)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L20A,Large ribosomal subunit protein uL22-A,YL17
53BB, YB60S ribosomal protein L18-Apolymer18520478.12UniProt (P0CX49)
Pfam (PF17135)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL18-A,RP28
54BF, YF60S ribosomal protein L19-Apolymer18821631.12UniProt (P0CX82)
Pfam (PF01280)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
55BH, YH60S ribosomal protein L20-Apolymer17220478.92UniProt (P0CX23)
Pfam (PF01775)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L18a,Large ribosomal subunit protein eL20-A
56BJ, YJ60S ribosomal protein L21-Apolymer15918148.12UniProt (Q02753)
Pfam (PF01157)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL21-A
57BL, YL60S ribosomal protein L22-Apolymer9811006.62UniProt (P05749)
Pfam (PF01776)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
58AB, XB60S ribosomal protein L23-Apolymer13414218.62UniProt (P0CX41)
Pfam (PF00238)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L17a,Large ribosomal subunit protein uL14-A,YL32
59AE, XE60S ribosomal protein L24-Apolymer13515506.22UniProt (P04449)
Pfam (PF01246)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L30,Large ribosomal subunit protein eL24-A,RP29,YL21
60AH, XH60S ribosomal protein L25polymer12013642.02UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
61AK, XK60S ribosomal protein L26-Apolymer12413892.32UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L33,Large ribosomal subunit protein uL24-A,YL33
62AN, XN60S ribosomal protein L27-Apolymer13515437.22UniProt (P0C2H6)
Pfam (PF01777)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL27-A
63AR, XR60S ribosomal protein L28polymer14816630.52UniProt (P02406)
Pfam (PF00828)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
64AV, XV60S ribosomal protein L29polymer586560.72UniProt (P05747)
Pfam (PF01779)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL29,YL43
65AY, XY60S ribosomal protein L30polymer10010902.72UniProt (P14120)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L32,Large ribosomal subunit protein eL30,RP73,YL38
66BC, YC60S ribosomal protein L31-Apolymer10912649.82UniProt (P0C2H8)
Pfam (PF01198)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L34,Large ribosomal subunit protein eL31-A,YL28
67BG, YG60S ribosomal protein L32polymer12714478.12UniProt (P38061)
Pfam (PF01655)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL32
68BK, YK60S ribosomal protein L33-Apolymer10612045.92UniProt (P05744)
Pfam (PF01247)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L37,Large ribosomal subunit protein eL33-A,RP47,YL37
69BN, YN60S ribosomal protein L34-Apolymer11212608.82UniProt (P87262)
Pfam (PF01199)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL34-A
70BP, YP60S ribosomal protein L35-Apolymer11913811.42UniProt (P0CX84)
Pfam (PF00831)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL29-A
71AC, XC60S ribosomal protein L36-Apolymer9911020.12UniProt (P05745)
Pfam (PF01158)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L39,Large ribosomal subunit protein eL36-A,YL39
72AF, XF60S ribosomal protein L37-Apolymer829300.72UniProt (P49166)
Pfam (PF01907)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L43,Large ribosomal subunit protein eL37-A,YL35,YP55
73AI, XI60S ribosomal protein L38polymer778714.42UniProt (P49167)
Pfam (PF01781)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL38
74AL, XL60S ribosomal protein L39polymer506227.42UniProt (P04650)
Pfam (PF00832)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L46,Large ribosomal subunit protein eL39,YL40
75AO, XOUbiquitin-60S ribosomal protein L40polymer526032.32UniProt (P0CH08)
Pfam (PF01020)
In PDB		Saccharomyces cerevisiae (Baker's yeast)
76AS, XS60S ribosomal protein L41-Bpolymer253354.22UniProt (P0CX87)
Pfam (PF05162)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L47,Large ribosomal subunit protein eL41-B,YL41
77AP, XP60S ribosomal protein L42-Apolymer10512115.52UniProt (P0CX27)
Pfam (PF00935)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L41,Large ribosomal subunit protein eL42-A,YL27,YP44
78AT, XT60S ribosomal protein L43-Apolymer919981.82UniProt (P0CX25)
Pfam (PF01780)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L37a,Large ribosomal subunit protein eL43-A,YL35
79BU, YU60S acidic ribosomal protein P0polymer31233749.12UniProt (P05317)
Pfam (PF00466)
Pfam (PF17777)
Pfam (PF00428)
In PDB		Saccharomyces cerevisiae (Baker's yeast)A0,L10e,Large ribosomal subunit protein uL10
80nP-site tRNApolymer7624468.61GenBank (1329886529)Saccharomyces cerevisiae
81mE-site tRNApolymer7524004.31GenBank (176418)Saccharomyces cerevisiae
82nbA/P hybrid tRNApolymer7624501.51Saccharomyces cerevisiae
83mbP/E hybrid tRNApolymer7724802.81Saccharomyces cerevisiae
84lmRNApolymer5717904.31Saccharomyces cerevisiae
85e, f, M, N, AO...ZINC IONnon-polymer65.415Chemie (ZN)
Sequence modifications
N, Nb: 80 - 152 (UniProt: P05759)
PDBExternal DatabaseDetails
Ala 97Lys 97conflict
O, Ob: 7 - 319 (UniProt: P38011)
PDBExternal DatabaseDetails
Ala 161Lys 161conflict
n: 1 - 73 (GenBank: 1329886529)
PDBExternal DatabaseDetails
C 74-insertion
C 75-insertion
A 76-insertion
m: 1 - 75 (GenBank: 176418)
PDBExternal DatabaseDetails
C 11U 11conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains163
Total formula weight6231492.5
Non-Polymers*Number of molecules15
Total formula weight981.1
All*Total formula weight6232473.7
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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