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6I7O

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, JD
(BQ, YQ)
25S ribosomal RNApolymer33961097493.92GenBank (834774822)Saccharomyces cerevisiae
2B, KD
(BR, YR)
5S ribosomal RNApolymer12138951.12GenBank (1329886537)Saccharomyces cerevisiae
3C, LD
(BS, YS)
5.8S ribosomal RNApolymer15750376.82GenBank (1489318609)Saccharomyces cerevisiae
4D, MD
(AW, XW)
60S ribosomal protein L2-Apolymer25227217.32UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
Saccharomyces cerevisiae (Baker's yeast)L5,Large ribosomal subunit protein uL2-A,RP8,YL6
5E, ND
(BA, YA)
60S ribosomal protein L3polymer38643719.62UniProt (P14126)
Pfam (PF00297)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
6F, OD
(BE, YE)
60S ribosomal protein L4-Apolymer36139027.92UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
Saccharomyces cerevisiae (Baker's yeast)L2,Large ribosomal subunit protein uL4-A,RP2,YL2
7G, PD
(BI, YI)
60S ribosomal protein L5polymer29433415.42UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
Saccharomyces cerevisiae (Baker's yeast)L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
8H, QD
(BM, YM)
60S ribosomal protein L6-Apolymer17620000.62UniProt (Q02326)
Pfam (PF01159)
Saccharomyces cerevisiae (Baker's yeast)L17,Large ribosomal subunit protein eL6-A,RP18,YL16
9I, RD
(BO, YO)
60S ribosomal protein L7-Apolymer22325341.52UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
Saccharomyces cerevisiae (Baker's yeast)L6,Large ribosomal subunit protein uL30-A,RP11,YL8
10J, SD
(AA, XA)
60S ribosomal protein L8-Apolymer23125656.82UniProt (P17076)
Pfam (PF01248)
Saccharomyces cerevisiae (Baker's yeast)L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
11K, TD
(AD, XD)
60S ribosomal protein L9-Apolymer19021491.92UniProt (P05738)
Pfam (PF00347)
Saccharomyces cerevisiae (Baker's yeast)L8,Large ribosomal subunit protein uL6-A,RP24,YL11
12L, UD
(BD, YD)
60S ribosomal protein L10polymer22125410.52UniProt (P41805)
Pfam (PF00252)
Saccharomyces cerevisiae (Baker's yeast)L9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
13M, VD
(AG, XG)
60S ribosomal protein L11-Bpolymer16919266.12UniProt (Q3E757)
Pfam (PF00281)
Pfam (PF00673)
Saccharomyces cerevisiae (Baker's yeast)L16,Large ribosomal subunit protein uL5-B,RP39,YL22
14N, WD
(AJ, XJ)
60S ribosomal protein L13-Apolymer19421956.32UniProt (Q12690)
Pfam (PF01294)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL13-A
15O, XD
(AM, XM)
60S ribosomal protein L14-Apolymer13715063.92UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL14-A
16P, YD
(AQ, XQ)
60S ribosomal protein L15-Apolymer20324351.22UniProt (P05748)
Pfam (PF00827)
Saccharomyces cerevisiae (Baker's yeast)L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
17Q, ZD
(AU, XU)
60S ribosomal protein L16-Apolymer19722029.02UniProt (P26784)
Pfam (PF00572)
Saccharomyces cerevisiae (Baker's yeast)L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
18BC, R
(2, 2b)
18S ribosomal RNApolymer1800579761.92GenBank (874346701)Saccharomyces cerevisiae
19CC, S
(P, Pb)
40S ribosomal protein S0-Apolymer20622811.12UniProt (P32905)
Pfam (PF00318)
Saccharomyces cerevisiae (Baker's yeast)Nucleic acid-binding protein NAB1A,Small ribosomal subunit protein uS2-A
20DC, T
(Q, Qb)
40S ribosomal protein S1-Apolymer21624498.42UniProt (P33442)
Pfam (PF01015)
Saccharomyces cerevisiae (Baker's yeast)RP10A,Small ribosomal subunit protein eS1-A
21EC, U
(R, Rb)
40S ribosomal protein S2polymer21723213.02UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)
Saccharomyces cerevisiae (Baker's yeast)Omnipotent suppressor protein SUP44,RP12,S4,Small ribosomal subunit protein uS5,YS5
22FC, V
(A, Ab)
40S ribosomal protein S3polymer22324702.82UniProt (P05750)
Pfam (PF07650)
Pfam (PF00189)
Saccharomyces cerevisiae (Baker's yeast)RP13,Small ribosomal subunit protein uS3,YS3
23GC, W
(S, Sb)
40S ribosomal protein S4-Apolymer26029338.12UniProt (P0CX35)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Saccharomyces cerevisiae (Baker's yeast)RP5,S7,Small ribosomal subunit protein eS4-A,YS6
24HC, X
(B, Bb)
40S ribosomal protein S5polymer20622908.32UniProt (P26783)
Pfam (PF00177)
Saccharomyces cerevisiae (Baker's yeast)RP14,S2,Small ribosomal subunit protein uS7,YS8
25IC, Y
(T, Tb)
40S ribosomal protein S6-Apolymer21824966.02UniProt (P0CX37)
Pfam (PF01092)
Saccharomyces cerevisiae (Baker's yeast)RP9,S10,Small ribosomal subunit protein eS6-A,YS4
26JC, Z
(U, Ub)
40S ribosomal protein S7-Apolymer18521071.62UniProt (P26786)
Pfam (PF01251)
Saccharomyces cerevisiae (Baker's yeast)RP30,RP40,Small ribosomal subunit protein eS7-A
27AA, KC
(V, Vb)
40S ribosomal protein S8-Apolymer20022537.82UniProt (P0CX39)
Pfam (PF01201)
Saccharomyces cerevisiae (Baker's yeast)RP19,S14,Small ribosomal subunit protein eS8-A,YS9
28BA, LC
(W, Wb)
40S ribosomal protein S9-Apolymer18521210.72UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)
Saccharomyces cerevisiae (Baker's yeast)RP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11
29CA, MC
(C, Cb)
40S ribosomal protein S10-Apolymer9211042.62UniProt (Q08745)
Pfam (PF03501)
Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS10-A
30DA, NC
(X, Xb)
40S ribosomal protein S11-Apolymer14616588.52UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)
Saccharomyces cerevisiae (Baker's yeast)RP41,S18,Small ribosomal subunit protein uS17-A,YS12
31EA, OC
(D, Db)
40S ribosomal protein S12polymer12413327.32UniProt (P48589)
Pfam (PF01248)
Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS12
32FA, PC
(Y, Yb)
40S ribosomal protein S13polymer15016928.72UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)
Saccharomyces cerevisiae (Baker's yeast)S27a,Small ribosomal subunit protein uS15,YS15
33GA, QC
(Z, Zb)
40S ribosomal protein S14-Bpolymer12813560.52UniProt (P39516)
Pfam (PF00411)
Saccharomyces cerevisiae (Baker's yeast)RP59B,Small ribosomal subunit protein uS11-B
34HA, RC
(E, Eb)
40S ribosomal protein S15polymer11913421.72UniProt (Q01855)
Pfam (PF00203)
Saccharomyces cerevisiae (Baker's yeast)RIG protein,RP52,S21,Small ribosomal subunit protein uS19,YS21
35IA, SC
(F, Fb)
40S ribosomal protein S16-Apolymer14115659.22UniProt (P0CX51)
Pfam (PF00380)
Saccharomyces cerevisiae (Baker's yeast)RP61R,Small ribosomal subunit protein uS9-A
36JA, TC
(G, Gb)
40S ribosomal protein S17-Apolymer12514268.52UniProt (P02407)
Pfam (PF00833)
Saccharomyces cerevisiae (Baker's yeast)RP51A,Small ribosomal subunit protein eS17-A
37KA, UC
(H, Hb)
40S ribosomal protein S18-Apolymer14516940.42UniProt (P0CX55)
Pfam (PF00416)
Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein uS13-A
38LA, VC
(I, Ib)
40S ribosomal protein S19-Apolymer14315810.92UniProt (P07280)
Pfam (PF01090)
Saccharomyces cerevisiae (Baker's yeast)RP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A
39MA, WC
(J, Jb)
40S ribosomal protein S20polymer10111476.52UniProt (P38701)
Pfam (PF00338)
Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein uS10
40NA, XC
(a, ab)
40S ribosomal protein S21-Apolymer879758.82UniProt (P0C0V8)
Pfam (PF01249)
Saccharomyces cerevisiae (Baker's yeast)S26,Small ribosomal subunit protein eS21-A,YS25
41OA, YC
(b, bb)
40S ribosomal protein S22-Apolymer12914518.92UniProt (P0C0W1)
Pfam (PF00410)
Saccharomyces cerevisiae (Baker's yeast)RP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22
42PA, ZC
(c, cb)
40S ribosomal protein S23-Apolymer14415942.72UniProt (P0CX29)
Pfam (PF00164)
Saccharomyces cerevisiae (Baker's yeast)RP37,S28,Small ribosomal subunit protein uS12-A,YS14
43AD, QA
(d, db)
40S ribosomal protein S24-Apolymer13415231.62UniProt (P0CX31)
Pfam (PF01282)
Saccharomyces cerevisiae (Baker's yeast)RP50,Small ribosomal subunit protein eS24-A
44BD, RA
(K, Kb)
40S ribosomal protein S25-Apolymer697930.32UniProt (Q3E792)
Pfam (PF03297)
Saccharomyces cerevisiae (Baker's yeast)RP45,S31,Small ribosomal subunit protein eS25-A,YS23
45CD, SA
(e, eb)
40S ribosomal protein S26-Bpolymer9711023.02UniProt (P39939)
Pfam (PF01283)
Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS26-B
46DD, TA
(f, fb)
40S ribosomal protein S27-Apolymer818762.22UniProt (P35997)
Pfam (PF01667)
Saccharomyces cerevisiae (Baker's yeast)RP61,Small ribosomal subunit protein eS27-A,YS20
47ED, UA
(L, Lb)
40S ribosomal protein S28-Apolymer637116.32UniProt (Q3E7X9)
Pfam (PF01200)
Saccharomyces cerevisiae (Baker's yeast)S33,Small ribosomal subunit protein eS28-A,YS27
48FD, VA
(M, Mb)
40S ribosomal protein S29-Apolymer536335.32UniProt (P41057)
Pfam (PF00253)
Saccharomyces cerevisiae (Baker's yeast)S36,Small ribosomal subunit protein uS14-A,YS29
49GD, WA
(g, gb)
40S ribosomal protein S30-Apolymer606779.12UniProt (P0CX33)
Pfam (PF04758)
Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS30-A
50HD, XA
(N, Nb)
Ubiquitin-40S ribosomal protein S31polymer738329.92UniProt (P05759)
Pfam (PF01599)
Saccharomyces cerevisiae (Baker's yeast)
51ID, YA
(O, Ob)
Guanine nucleotide-binding protein subunit beta-like proteinpolymer31334151.42UniProt (P38011)
Pfam (PF00400)
Saccharomyces cerevisiae (Baker's yeast)Receptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1,Small ribosomal subunit protein RACK1
52AE, ZA
(AX, XX)
60S ribosomal protein L17-Apolymer18420589.52UniProt (P05740)
Pfam (PF00237)
Saccharomyces cerevisiae (Baker's yeast)L20A,Large ribosomal subunit protein uL22-A,YL17
53AB, BE
(BB, YB)
60S ribosomal protein L18-Apolymer18520478.12UniProt (P0CX49)
Pfam (PF17135)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL18-A,RP28
54BB, CE
(BF, YF)
60S ribosomal protein L19-Apolymer18821631.12UniProt (P0CX82)
Pfam (PF01280)
Saccharomyces cerevisiae (Baker's yeast)L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
55CB, DE
(BH, YH)
60S ribosomal protein L20-Apolymer17220478.92UniProt (P0CX23)
Pfam (PF01775)
Saccharomyces cerevisiae (Baker's yeast)L18a,Large ribosomal subunit protein eL20-A
56DB, EE
(BJ, YJ)
60S ribosomal protein L21-Apolymer15918148.12UniProt (Q02753)
Pfam (PF01157)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL21-A
57EB, FE
(BL, YL)
60S ribosomal protein L22-Apolymer9811006.62UniProt (P05749)
Pfam (PF01776)
Saccharomyces cerevisiae (Baker's yeast)L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
58FB, GE
(AB, XB)
60S ribosomal protein L23-Apolymer13414218.62UniProt (P0CX41)
Pfam (PF00238)
Saccharomyces cerevisiae (Baker's yeast)L17a,Large ribosomal subunit protein uL14-A,YL32
59GB, HE
(AE, XE)
60S ribosomal protein L24-Apolymer13515506.22UniProt (P04449)
Pfam (PF01246)
Saccharomyces cerevisiae (Baker's yeast)L30,Large ribosomal subunit protein eL24-A,RP29,YL21
60HB, IE
(AH, XH)
60S ribosomal protein L25polymer12013642.02UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
61IB, JE
(AK, XK)
60S ribosomal protein L26-Apolymer12413892.32UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
Saccharomyces cerevisiae (Baker's yeast)L33,Large ribosomal subunit protein uL24-A,YL33
62JB, KE
(AN, XN)
60S ribosomal protein L27-Apolymer13515437.22UniProt (P0C2H6)
Pfam (PF01777)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL27-A
63KB, LE
(AR, XR)
60S ribosomal protein L28polymer14816630.52UniProt (P02406)
Pfam (PF00828)
Saccharomyces cerevisiae (Baker's yeast)L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
64LB, ME
(AV, XV)
60S ribosomal protein L29polymer586560.72UniProt (P05747)
Pfam (PF01779)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL29,YL43
65MB, NE
(AY, XY)
60S ribosomal protein L30polymer10010902.72UniProt (P14120)
Pfam (PF01248)
Saccharomyces cerevisiae (Baker's yeast)L32,Large ribosomal subunit protein eL30,RP73,YL38
66NB, OE
(BC, YC)
60S ribosomal protein L31-Apolymer10912649.82UniProt (P0C2H8)
Pfam (PF01198)
Saccharomyces cerevisiae (Baker's yeast)L34,Large ribosomal subunit protein eL31-A,YL28
67OB, PE
(BG, YG)
60S ribosomal protein L32polymer12714478.12UniProt (P38061)
Pfam (PF01655)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL32
68PB, QE
(BK, YK)
60S ribosomal protein L33-Apolymer10612045.92UniProt (P05744)
Pfam (PF01247)
Saccharomyces cerevisiae (Baker's yeast)L37,Large ribosomal subunit protein eL33-A,RP47,YL37
69QB, RE
(BN, YN)
60S ribosomal protein L34-Apolymer11212608.82UniProt (P87262)
Pfam (PF01199)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL34-A
70RB, SE
(BP, YP)
60S ribosomal protein L35-Apolymer11913811.42UniProt (P0CX84)
Pfam (PF00831)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL29-A
71SB, TE
(AC, XC)
60S ribosomal protein L36-Apolymer9911020.12UniProt (P05745)
Pfam (PF01158)
Saccharomyces cerevisiae (Baker's yeast)L39,Large ribosomal subunit protein eL36-A,YL39
72TB, UE
(AF, XF)
60S ribosomal protein L37-Apolymer829300.72UniProt (P49166)
Pfam (PF01907)
Saccharomyces cerevisiae (Baker's yeast)L43,Large ribosomal subunit protein eL37-A,YL35,YP55
73UB, VE
(AI, XI)
60S ribosomal protein L38polymer778714.42UniProt (P49167)
Pfam (PF01781)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL38
74VB, WE
(AL, XL)
60S ribosomal protein L39polymer506227.42UniProt (P04650)
Pfam (PF00832)
Saccharomyces cerevisiae (Baker's yeast)L46,Large ribosomal subunit protein eL39,YL40
75WB, XE
(AO, XO)
Ubiquitin-60S ribosomal protein L40polymer526032.32UniProt (P0CH08)
Pfam (PF01020)
Saccharomyces cerevisiae (Baker's yeast)
76XB, YE
(AS, XS)
60S ribosomal protein L41-Bpolymer253354.22UniProt (P0CX87)
Pfam (PF05162)
Saccharomyces cerevisiae (Baker's yeast)L47,Large ribosomal subunit protein eL41-B,YL41
77YB, ZE
(AP, XP)
60S ribosomal protein L42-Apolymer10512115.52UniProt (P0CX27)
Pfam (PF00935)
Saccharomyces cerevisiae (Baker's yeast)L41,Large ribosomal subunit protein eL42-A,YL27,YP44
78AF, ZB
(AT, XT)
60S ribosomal protein L43-Apolymer919981.82UniProt (P0CX25)
Pfam (PF01780)
Saccharomyces cerevisiae (Baker's yeast)L37a,Large ribosomal subunit protein eL43-A,YL35
79AC, BF
(BU, YU)
60S acidic ribosomal protein P0polymer31233749.12UniProt (P05317)
Pfam (PF00466)
Pfam (PF17777)
Pfam (PF00428)
Saccharomyces cerevisiae (Baker's yeast)A0,L10e,Large ribosomal subunit protein uL10
80CF
(n)
P-site tRNApolymer7624468.61GenBank (1329886529)Saccharomyces cerevisiae
81DF
(m)
E-site tRNApolymer7524004.31GenBank (176418)Saccharomyces cerevisiae
82EF
(nb)
A/P hybrid tRNApolymer7624501.51Saccharomyces cerevisiae
83FF
(mb)
P/E hybrid tRNApolymer7724802.81Saccharomyces cerevisiae
84GF
(l)
mRNApolymer5717904.31Saccharomyces cerevisiae
85HF, IF, JF, KF, LF...
(e, f, M, N, AO...)
ZINC IONnon-polymer65.415Chemie (ZN)
Sequence modifications
N, Nb: 80 - 152 (UniProt: P05759)
PDBExternal DatabaseDetails
Ala 97Lys 97conflict
O, Ob: 7 - 319 (UniProt: P38011)
PDBExternal DatabaseDetails
Ala 161Lys 161conflict
n: 1 - 73 (GenBank: 1329886529)
PDBExternal DatabaseDetails
C 74-insertion
C 75-insertion
A 76-insertion
m: 1 - 75 (GenBank: 176418)
PDBExternal DatabaseDetails
C 11U 11conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains163
Total formula weight6231492.5
Non-Polymers*Number of molecules15
Total formula weight981.1
All*Total formula weight6232473.7
*Water molecules are not included.

247536

PDB entries from 2026-01-14

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