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6HY1

Plasmodium falciparum spermidine synthase in complex with 5'-methylthioadenosine and N,N'-Bis(3-aminopropyl)-1,4-cyclohexanediamine after catalysis in crystal

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C
(A, B, C)
Spermidine synthasepolymer28132077.03UniProt (Q8II73)
Pfam (PF17284)
Pfam (PF01564)
Plasmodium falciparum (isolate 3D7)
2D, H
(A, B)
N,N'-Bis(3-aminopropyl)-1,4-cyclohexanediaminenon-polymer228.42Chemie (GXQ)
PubChem (9899398)
3E, I, O
(A, B, C)
5'-DEOXY-5'-METHYLTHIOADENOSINEnon-polymer297.33Chemie (MTA)
PubChem (25322898)
4F, K
(A, B)
2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOLnon-polymer252.32Chemie (1PG)
PubChem (90255)
5G, J, L, M, P...
(A, B, C)
GLYCEROLnon-polymer92.17Chemie (GOL)
PubChem (753)
6N
(C)
trans-N-(3-aminopropyl)cyclohexane-1,4-diaminenon-polymer171.31Chemie (JFQ)
PubChem (19004811)
7S, T, U
(A, B, C)
waterwater18.0784Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight96231.1
Non-Polymers*Number of molecules15
Total formula weight2669.3
All*Total formula weight98900.4
*Water molecules are not included.

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PDB entries from 2026-03-25

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