6HKU
Trichodysplasia spinulosa-associated polyomavirus (TSPyV) VP1 in complex with sialylated precision glycooligomers
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Capsid protein VP1 | polymer | 272 | 30221.0 | 10 | UniProt (E2ESL7) Pfam (PF00718) | Trichodysplasia spinulosa-associated polyomavirus | |
| 2 | K, L, M (K, L, M) | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose | branched | 471.4 | 3 | In PDB GlyTouCan (G30207PZ) | |||
| 3 | N, O (N, O) | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose | branched | 633.6 | 2 | In PDB BIRD (PRD_900025) GlyTouCan (G92323ZH) | 3'-sialyl-alpha-lactose | ||
| 4 | P, R (C, H) | GLYCEROL | non-polymer | 92.1 | 2 | Chemie (GOL) | |||
| 5 | Q (D) | N-acetyl-alpha-neuraminic acid | non-polymer | 309.3 | 1 | Chemie (SIA) | |||
| 6 | AA, BA, S, T, U... (I, J, A, B, C...) | water | water | 18.0 | 2349 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F, G, H, I, J: 32 - 303 (UniProt: E2ESL7)
| PDB | External Database | Details |
|---|---|---|
| Ser 107 | Cys 108 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 10 |
| Total formula weight | 302209.8 | |
| Branched | Number of molecules | 5 |
| Total formula weight | 2681.3 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 493.5 | |
| All* | Total formula weight | 305384.6 |
