6HIZ
Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the head of the small mitoribosomal subunit
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | DA | mS48 | polymer | 1788 | 201811.2 | 1 | UniProt (Q57UJ2) In PDB | Trypanosoma brucei brucei | |
2 | DL | mS59 | polymer | 307 | 35395.7 | 1 | UniProt (Q38BS2) In PDB | Trypanosoma brucei brucei | |
3 | DB | mS49 | polymer | 1181 | 137234.1 | 1 | UniProt (Q586P5) In PDB | Trypanosoma brucei brucei | |
4 | DC | mS50 | polymer | 1165 | 131719.3 | 1 | UniProt (Q57YB5) In PDB | Trypanosoma brucei brucei | |
5 | DE | mS52 | polymer | 747 | 85012.3 | 1 | UniProt (Q386Q7) In PDB | Trypanosoma brucei brucei | |
6 | DF | mS53 | polymer | 666 | 75338.9 | 1 | UniProt (Q38ET1) In PDB | Trypanosoma brucei brucei | |
7 | DG | mS54 | polymer | 631 | 72046.0 | 1 | UniProt (Q57ZP8) In PDB | Trypanosoma brucei brucei | |
8 | DH | mS55 | polymer | 581 | 66676.7 | 1 | UniProt (Q580V1) In PDB | Trypanosoma brucei brucei | |
9 | DJ | mS57 | polymer | 396 | 45956.3 | 1 | UniProt (Q584U8) In PDB | Trypanosoma brucei brucei | |
10 | DK | mS58 | polymer | 324 | 35623.9 | 1 | UniProt (Q38BP1) In PDB | Trypanosoma brucei brucei | |
11 | DT | mS67 | polymer | 247 | 30096.1 | 1 | UniProt (Q586G5) Pfam (PF00581) In PDB | Trypanosoma brucei brucei | |
12 | DV | mS69 | polymer | 183 | 21589.7 | 1 | UniProt (Q57UZ6) In PDB | Trypanosoma brucei brucei | |
13 | DW | mS70 | polymer | 179 | 21247.4 | 1 | UniProt (Q383N9) In PDB | Trypanosoma brucei brucei | |
14 | DX | mS71 | polymer | 169 | 20093.2 | 1 | UniProt (Q383G5) In PDB | Trypanosoma brucei brucei | |
15 | DY | mS72 | polymer | 163 | 19317.3 | 1 | UniProt (Q57YD4) In PDB | Trypanosoma brucei brucei | |
16 | CC | uS3m | polymer | 74 | 9070.9 | 1 | Trypanosoma brucei brucei | ||
17 | CI | uS9m | polymer | 443 | 50128.9 | 1 | UniProt (Q57W62) Pfam (PF00380) In PDB | Trypanosoma brucei brucei | |
18 | CJ | uS10m | polymer | 817 | 94351.0 | 1 | UniProt (Q57Z45) Pfam (PF01476) In PDB | Trypanosoma brucei brucei | |
19 | CK | uS11m | polymer | 326 | 37925.9 | 1 | UniProt (Q389T7) In PDB | Trypanosoma brucei brucei | |
20 | CN | uS14m | polymer | 166 | 19900.0 | 1 | UniProt (Q580I0) In PDB | Trypanosoma brucei brucei | |
21 | CR | uS18m | polymer | 320 | 36988.7 | 1 | UniProt (Q38AS2) In PDB | Trypanosoma brucei brucei | |
22 | CS | uS19m | polymer | 244 | 28364.6 | 1 | UniProt (Q584T8) In PDB | Trypanosoma brucei brucei | |
23 | Cg | mS29 | polymer | 498 | 57048.8 | 1 | UniProt (Q585C2) Pfam (PF10236) In PDB | Trypanosoma brucei brucei | |
24 | Ci | mS33 | polymer | 181 | 21244.1 | 1 | UniProt (Q57WW0) In PDB | Trypanosoma brucei brucei | |
25 | Ck | mS35 | polymer | 874 | 98377.8 | 1 | UniProt (Q387C7) In PDB | Trypanosoma brucei brucei | |
26 | CA | RNA (143-MER) | polymer | 611 | 195379.7 | 1 | GenBank (343546) | Trypanosoma brucei brucei | |
27 | UO | Unknown protein | polymer | 5 | 443.5 | 1 | Trypanosoma brucei brucei | ||
28 | UP | Unknown protein | polymer | 7 | 613.7 | 1 | Trypanosoma brucei brucei | ||
29 | DL, CA | SPERMIDINE | non-polymer | 145.2 | 2 | Chemie (SPD) | |||
30 | DJ | URIDINE 5'-TRIPHOSPHATE | non-polymer | 484.1 | 1 | Chemie (UTP) | |||
31 | Cg | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 1 | Chemie (GTP) | |||
32 | Cg, CA | MAGNESIUM ION | non-polymer | 24.3 | 3 | Chemie (MG) | |||
33 | water | water | 18.0 | 3 | Chemie (HOH) |
Sequence modifications
DA: 1 - 1788 (UniProt: Q57UJ2)
DL: 1 - 307 (UniProt: Q38BS2)
DB: 1 - 1181 (UniProt: Q586P5)
DC: 1 - 1165 (UniProt: Q57YB5)
DE: 1 - 747 (UniProt: Q386Q7)
DF: 1 - 666 (UniProt: Q38ET1)
DG: 1 - 631 (UniProt: Q57ZP8)
DH: 1 - 581 (UniProt: Q580V1)
DK: 1 - 324 (UniProt: Q38BP1)
DV: 1 - 183 (UniProt: Q57UZ6)
DW: 1 - 179 (UniProt: Q383N9)
CI: 1 - 443 (UniProt: Q57W62)
CJ: 1 - 817 (UniProt: Q57Z45)
CK: 1 - 326 (UniProt: Q389T7)
CR: 1 - 320 (UniProt: Q38AS2)
CS: 1 - 172 (UniProt: Q584T8)
Cg: 1 - 498 (UniProt: Q585C2)
Ck: 1 - 874 (UniProt: Q387C7)
CA: 1 - 611 (GenBank: 343546)
PDB | External Database | Details |
---|---|---|
His 894 | Asn 894 | conflict |
Thr 1181 | Ile 1181 | conflict |
Ala 1333 | Val 1333 | conflict |
Arg 1700 | His 1700 | conflict |
Lys 1761 | Arg 1761 | conflict |
PDB | External Database | Details |
---|---|---|
Thr 274 | Ala 274 | conflict |
PDB | External Database | Details |
---|---|---|
Val 23 | Ala 23 | conflict |
Ile 359 | Thr 359 | conflict |
Gln 384 | His 384 | conflict |
Thr 402 | Ile 402 | conflict |
Thr 423 | Ala 423 | conflict |
Arg 586 | His 586 | conflict |
Arg 593 | Lys 593 | conflict |
Ser 647 | Gly 647 | conflict |
PDB | External Database | Details |
---|---|---|
Ala 53 | Thr 53 | conflict |
Lys 365 | Glu 365 | conflict |
Thr 385 | Ala 385 | conflict |
Ile 405 | Val 405 | conflict |
Ser 641 | Pro 641 | conflict |
Lys 651 | Glu 651 | conflict |
Glu 731 | Asp 731 | conflict |
Gln 814 | His 814 | conflict |
Ala 1097 | Val 1097 | conflict |
Thr 1113 | Ile 1113 | conflict |
PDB | External Database | Details |
---|---|---|
Thr 514 | Ser 514 | conflict |
PDB | External Database | Details |
---|---|---|
Thr 18 | Ala 18 | conflict |
Asp 258 | Asn 258 | conflict |
Asn 372 | Asp 372 | conflict |
Asn 406 | Ser 406 | conflict |
Asp 510 | Gly 510 | conflict |
Ala 577 | Val 577 | conflict |
Unk 636 | Gly 636 | conflict |
Lys 638 | Arg 638 | conflict |
PDB | External Database | Details |
---|---|---|
Asn 428 | Ser 428 | conflict |
Gly 429 | Ser 429 | conflict |
PDB | External Database | Details |
---|---|---|
His 191 | Gln 191 | conflict |
Pro 194 | Arg 194 | conflict |
Gly 488 | Ser 488 | conflict |
PDB | External Database | Details |
---|---|---|
Ser 61 | Pro 131 | conflict |
Gly 257 | Ser 327 | conflict |
PDB | External Database | Details |
---|---|---|
Ala 163 | Thr 163 | conflict |
PDB | External Database | Details |
---|---|---|
Thr 74 | Met 74 | conflict |
PDB | External Database | Details |
---|---|---|
Unk 279 | Arg 279 | conflict |
Ala 370 | Val 370 | conflict |
PDB | External Database | Details |
---|---|---|
Leu 311 | Tyr 311 | conflict |
His 484 | Arg 484 | conflict |
Ser 488 | Asn 488 | conflict |
Glu 594 | Val 594 | conflict |
Arg 629 | Lys 629 | conflict |
PDB | External Database | Details |
---|---|---|
Arg 3 | Gln 3 | conflict |
Unk 138 | Ile 138 | conflict |
PDB | External Database | Details |
---|---|---|
Ile 8 | Val 8 | conflict |
PDB | External Database | Details |
---|---|---|
Met -71 | - | initiating methionine |
Ala -70 | - | expression tag |
Phe -69 | - | expression tag |
Arg -68 | - | expression tag |
Asn -67 | - | expression tag |
Thr -66 | - | expression tag |
Phe -65 | - | expression tag |
Thr -64 | - | expression tag |
Thr -63 | - | expression tag |
Pro -62 | - | expression tag |
Gly -61 | - | expression tag |
Lys -60 | - | expression tag |
Phe -59 | - | expression tag |
Ser -58 | - | expression tag |
Thr -57 | - | expression tag |
Val -56 | - | expression tag |
Ser -55 | - | expression tag |
Lys -54 | - | expression tag |
Asn -53 | - | expression tag |
Ile -52 | - | expression tag |
Val -51 | - | expression tag |
Leu -50 | - | expression tag |
Leu -49 | - | expression tag |
Leu -48 | - | expression tag |
Ile -47 | - | expression tag |
Trp -46 | - | expression tag |
Arg -45 | - | expression tag |
Val -44 | - | expression tag |
Lys -43 | - | expression tag |
Val -42 | - | expression tag |
Phe -41 | - | expression tag |
Leu -40 | - | expression tag |
Arg -39 | - | expression tag |
Ala -38 | - | expression tag |
Glu -37 | - | expression tag |
Gly -36 | - | expression tag |
Phe -35 | - | expression tag |
Ala -34 | - | expression tag |
His -33 | - | expression tag |
Ser -32 | - | expression tag |
Leu -31 | - | expression tag |
Val -30 | - | expression tag |
Met -29 | - | expression tag |
Leu -28 | - | expression tag |
Pro -27 | - | expression tag |
Val -26 | - | expression tag |
Ser -25 | - | expression tag |
Leu -24 | - | expression tag |
Tyr -23 | - | expression tag |
Ser -22 | - | expression tag |
Lys -21 | - | expression tag |
Ile -20 | - | expression tag |
Leu -19 | - | expression tag |
Leu -18 | - | expression tag |
Cys -17 | - | expression tag |
Asp -16 | - | expression tag |
Val -15 | - | expression tag |
Lys -14 | - | expression tag |
Lys -13 | - | expression tag |
Lys -12 | - | expression tag |
Ile -11 | - | expression tag |
Val -10 | - | expression tag |
Tyr -9 | - | expression tag |
Phe -8 | - | expression tag |
His -7 | - | expression tag |
Cys -6 | - | expression tag |
Cys -5 | - | expression tag |
Thr -4 | - | expression tag |
Arg -3 | - | expression tag |
Lys -2 | - | expression tag |
Lys -1 | - | expression tag |
Ser 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Val 181 | Ala 181 | conflict |
Arg 498 | Met 498 | conflict |
PDB | External Database | Details |
---|---|---|
Ser 107 | Leu 107 | conflict |
Phe 144 | Leu 144 | conflict |
Tyr 253 | Phe 253 | conflict |
Glu 339 | Val 339 | conflict |
Gly 871 | Glu 871 | conflict |
PDB | External Database | Details |
---|---|---|
U 473 | G 3014 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 28 |
Total formula weight | 1648995.8 | |
Non-Polymers* | Number of molecules | 7 |
Total formula weight | 1370.7 | |
All* | Total formula weight | 1650366.6 |