Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6HIZ

Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the head of the small mitoribosomal subunit

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
Cg	0000166	molecular_function	nucleotide binding
Cg	0003735	molecular_function	structural constituent of ribosome
Cg	0005524	molecular_function	ATP binding
Cg	0005525	molecular_function	GTP binding
Cg	0005737	cellular_component	cytoplasm
Cg	0005739	cellular_component	mitochondrion
Cg	0005763	cellular_component	mitochondrial small ribosomal subunit
Cg	0005840	cellular_component	ribosome
Cg	0031981	cellular_component	nuclear lumen
Cg	0046872	molecular_function	metal ion binding
Cg	0097014	cellular_component	ciliary plasm
Cg	1990904	cellular_component	ribonucleoprotein complex
Ci	0005739	cellular_component	mitochondrion
Ci	0005763	cellular_component	mitochondrial small ribosomal subunit
CI	0003735	molecular_function	structural constituent of ribosome
CI	0005739	cellular_component	mitochondrion
CI	0005763	cellular_component	mitochondrial small ribosomal subunit
CI	0005840	cellular_component	ribosome
CI	0006412	biological_process	translation
CI	0020023	cellular_component	kinetoplast
CI	1990904	cellular_component	ribonucleoprotein complex
CJ	0005737	cellular_component	cytoplasm
CJ	0005739	cellular_component	mitochondrion
CJ	0005763	cellular_component	mitochondrial small ribosomal subunit
Ck	0000963	biological_process	mitochondrial RNA processing
Ck	0003723	molecular_function	RNA binding
Ck	0005737	cellular_component	cytoplasm
Ck	0005739	cellular_component	mitochondrion
Ck	0031019	cellular_component	mitochondrial mRNA editing complex
Ck	0043631	biological_process	obsolete RNA polyadenylation
Ck	0048255	biological_process	mRNA stabilization
CK	0003735	molecular_function	structural constituent of ribosome
CK	0005739	cellular_component	mitochondrion
CK	0005763	cellular_component	mitochondrial small ribosomal subunit
CK	0005840	cellular_component	ribosome
CK	0006412	biological_process	translation
CK	1990904	cellular_component	ribonucleoprotein complex
CN	0005739	cellular_component	mitochondrion
CN	0005763	cellular_component	mitochondrial small ribosomal subunit
CN	0020023	cellular_component	kinetoplast
CR	0003723	molecular_function	RNA binding
CR	0005737	cellular_component	cytoplasm
CR	0005739	cellular_component	mitochondrion
CR	0005763	cellular_component	mitochondrial small ribosomal subunit
CR	0043631	biological_process	obsolete RNA polyadenylation
CR	0048255	biological_process	mRNA stabilization
CS	0005739	cellular_component	mitochondrion
CS	0005763	cellular_component	mitochondrial small ribosomal subunit
DA	0005739	cellular_component	mitochondrion
DA	0005763	cellular_component	mitochondrial small ribosomal subunit
DA	0020023	cellular_component	kinetoplast
DA	0046872	molecular_function	metal ion binding
DB	0005654	cellular_component	nucleoplasm
DB	0005737	cellular_component	cytoplasm
DB	0005739	cellular_component	mitochondrion
DB	0005763	cellular_component	mitochondrial small ribosomal subunit
DB	0097014	cellular_component	ciliary plasm
DC	0005739	cellular_component	mitochondrion
DC	0005763	cellular_component	mitochondrial small ribosomal subunit
DC	0020023	cellular_component	kinetoplast
DE	0000963	biological_process	mitochondrial RNA processing
DE	0003723	molecular_function	RNA binding
DE	0005739	cellular_component	mitochondrion
DE	0020023	cellular_component	kinetoplast
DE	0031019	cellular_component	mitochondrial mRNA editing complex
DE	0043631	biological_process	obsolete RNA polyadenylation
DE	0048255	biological_process	mRNA stabilization
DF	0005737	cellular_component	cytoplasm
DF	0005739	cellular_component	mitochondrion
DF	0005763	cellular_component	mitochondrial small ribosomal subunit
DG	0005634	cellular_component	nucleus
DG	0005737	cellular_component	cytoplasm
DG	0005739	cellular_component	mitochondrion
DG	0005763	cellular_component	mitochondrial small ribosomal subunit
DH	0003729	molecular_function	mRNA binding
DH	0005739	cellular_component	mitochondrion
DH	0005763	cellular_component	mitochondrial small ribosomal subunit
DH	0006396	biological_process	RNA processing
DH	0007005	biological_process	mitochondrion organization
DJ	0005737	cellular_component	cytoplasm
DJ	0005739	cellular_component	mitochondrion
DJ	0005763	cellular_component	mitochondrial small ribosomal subunit
DL	0005739	cellular_component	mitochondrion
DL	0005763	cellular_component	mitochondrial small ribosomal subunit
DT	0004792	molecular_function	thiosulfate-cyanide sulfurtransferase activity
DT	0005739	cellular_component	mitochondrion
DT	0005763	cellular_component	mitochondrial small ribosomal subunit
DV	0005739	cellular_component	mitochondrion
DV	0005763	cellular_component	mitochondrial small ribosomal subunit
DW	0005739	cellular_component	mitochondrion
DW	0005763	cellular_component	mitochondrial small ribosomal subunit
DX	0005739	cellular_component	mitochondrion
DY	0005739	cellular_component	mitochondrion
DY	0005763	cellular_component	mitochondrial small ribosomal subunit
DY	0020023	cellular_component	kinetoplast

Functional Information from PDB Data

site_id	AC1
Number of Residues	3
Details	binding site for residue SPD DL 401

Chain	Residue
CA	A399
CA	A459
DL	HIS267

site_id	AC2
Number of Residues	11
Details	binding site for residue UTP DJ 401

Chain	Residue
DJ	ARG209
DJ	ARG236
DJ	LYS283
DJ	LEU284
DJ	ARG285
CA	U429
DF	ARG188
DJ	ARG132
DJ	LYS171
DJ	PHE202
DJ	LYS205

site_id	AC3
Number of Residues	22
Details	binding site for residue GTP Cg 501

Chain	Residue
Cg	ARG96
Cg	VAL97
Cg	GLN99
Cg	THR100
Cg	GLY108
Cg	PHE109
Cg	LEU110
Cg	ARG112
Cg	THR151
Cg	GLY152
Cg	CYS153
Cg	GLY154
Cg	LYS155
Cg	SER156
Cg	ALA157
Cg	THR358
Cg	ARG359
Cg	PRO452
Cg	MG502
Cg	HOH601
Cg	HOH602
Cg	HOH603

site_id	AC4
Number of Residues	5
Details	binding site for residue MG Cg 502

Chain	Residue
Cg	SER156
Cg	GTP501
Cg	HOH601
Cg	HOH602
Cg	HOH603

site_id	AC5
Number of Residues	1
Details	binding site for residue MG CA 701

Chain	Residue
CA	U415

site_id	AC6
Number of Residues	8
Details	binding site for residue SPD CA 703

Chain	Residue
CA	A452
CA	A453
CA	G454
CA	G466
CA	A467
CA	A469
CJ	MET387
DL	ARG292

Functional Information from PROSITE/UniProt

site_id	PS00307
Number of Residues	7
Details	LECTIN_LEGUME_BETA Legume lectins beta-chain signature. LTVQLDS

Chain	Residue	Details
DB	LEU797-SER803

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)