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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6HIY

Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the body of the small mitoribosomal subunit in complex with mt-IF-3

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1DAmS48polymer1788201811.21UniProt (Q57UJ2)
In PDB		Trypanosoma brucei brucei
2DDmS51polymer81295081.01UniProt (Q385L8)
In PDB		Trypanosoma brucei brucei
3DImS56polymer40747306.81UniProt (Q587C2)
In PDB		Trypanosoma brucei brucei
4DLmS59polymer30735395.71UniProt (Q38BS2)
In PDB		Trypanosoma brucei brucei
5DMmS60polymer29434546.61UniProt (Q57XL2)
In PDB		Trypanosoma brucei brucei
6DNmS61polymer29333482.31UniProt (Q38D60)
In PDB		Trypanosoma brucei brucei
7DOmS62polymer28232068.11UniProt (Q383D1)
In PDB		Trypanosoma brucei brucei
8DPmS63polymer27431922.21UniProt (Q38F25)
In PDB		Trypanosoma brucei brucei
9DQmS64polymer26830742.21UniProt (Q382E8)
Pfam (PF10469)
In PDB		Trypanosoma brucei brucei
10DRmS65polymer27030617.41UniProt (Q57UA2)
In PDB		Trypanosoma brucei brucei
11DSmS66polymer26129960.21UniProt (Q388L7)
Pfam (PF14311)
In PDB		Trypanosoma brucei brucei
12DUmS68polymer22826472.81UniProt (Q582T9)
Pfam (PF00240)
In PDB		Trypanosoma brucei brucei
13DZmS73polymer9411360.91UniProt (Q587C4)
In PDB		Trypanosoma brucei brucei
14DamS74polymer648203.41Trypanosoma brucei brucei
15CEmS55mpolymer43550147.41UniProt (Q38AX6)
Pfam (PF03719)
In PDB		Trypanosoma brucei brucei
16CFbS6mpolymer16018861.51UniProt (Q38BW5)
In PDB		Trypanosoma brucei brucei
17CHuS8mpolymer28232766.51UniProt (Q388R7)
Pfam (PF00410)
In PDB		Trypanosoma brucei brucei
18CIuS9mpolymer44350201.01UniProt (Q57W62)
Pfam (PF00380)
In PDB		Trypanosoma brucei brucei
19CKuS11mpolymer32637925.91UniProt (Q389T7)
In PDB		Trypanosoma brucei brucei
20CLuS12mpolymer8710421.61Trypanosoma brucei brucei
21COuS15mpolymer42950401.21UniProt (Q4GZ99)
In PDB		Trypanosoma brucei brucei
22CPbS16mpolymer18822077.81UniProt (Q384N9)
In PDB		Trypanosoma brucei brucei
23CQuS17mpolymer30735632.71UniProt (Q38DP8)
Pfam (PF00366)
In PDB		Trypanosoma brucei brucei
24CRbS18mpolymer32036988.71UniProt (Q38AS2)
In PDB		Trypanosoma brucei brucei
25CUuS21mpolymer19323087.91UniProt (Q580M9)
In PDB		Trypanosoma brucei brucei
26CZmt-IF-3polymer36041086.31UniProt (Q57WU2)
In PDB		Trypanosoma brucei brucei
27CamS22polymer60273064.11UniProt (Q38DR3)
In PDB		Trypanosoma brucei brucei
28CbmS23polymer32436784.51UniProt (Q57VB2)
In PDB		Trypanosoma brucei brucei
29CdmS26polymer44051136.71UniProt (Q38DK6)
In PDB		Trypanosoma brucei brucei
30CjmS34polymer25728728.21UniProt (Q57UK0)
In PDB		Trypanosoma brucei brucei
31CmmS37polymer21524757.91UniProt (Q38C96)
In PDB		Trypanosoma brucei brucei
32CnmS38polymer25028240.61UniProt (Q57VQ9)
In PDB		Trypanosoma brucei brucei
33CpmS41polymer18722421.51UniProt (Q389L3)
In PDB		Trypanosoma brucei brucei
34CqmS42polymer26329748.71UniProt (Q586A1)
Pfam (PF02777)
In PDB		Trypanosoma brucei brucei
35CrmS43polymer43948590.41UniProt (Q585I1)
Pfam (PF02777)
In PDB		Trypanosoma brucei brucei
36CvmS47polymer1211137935.01UniProt (Q383R4)
Pfam (PF16113)
In PDB		Trypanosoma brucei brucei
37CA9S rRNApolymer621198481.41GenBank (343546)Trypanosoma brucei brucei
38UQUnknown proteinpolymer322741.41Trypanosoma brucei brucei
39URUnknown proteinpolymer8698.91Trypanosoma brucei brucei
40USUnknown proteinpolymer544613.71Trypanosoma brucei brucei
41UTUnknown proteinpolymer443762.61Trypanosoma brucei brucei
42DA, DS, CrZINC IONnon-polymer65.44Chemie (ZN)
43CA, CO, CQ, Ca, CvMAGNESIUM IONnon-polymer24.336Chemie (MG)
44CASPERMIDINEnon-polymer145.22Chemie (SPD)
45CASPERMINEnon-polymer202.31Chemie (SPM)
Sequence modifications
DA: 1 - 1788 (UniProt: Q57UJ2)
PDBExternal DatabaseDetails
His 894Asn 894conflict
Thr 1181Ile 1181conflict
Ala 1333Val 1333conflict
Arg 1700His 1700conflict
Lys 1761Arg 1761conflict
DD: 1 - 812 (UniProt: Q385L8)
PDBExternal DatabaseDetails
Pro 371Ser 371conflict
Ala 599Val 599conflict
DI: 1 - 407 (UniProt: Q587C2)
PDBExternal DatabaseDetails
Glu 92Gly 92conflict
Asp 116Glu 116conflict
DL: 1 - 307 (UniProt: Q38BS2)
PDBExternal DatabaseDetails
Thr 274Ala 274conflict
DM: 1 - 294 (UniProt: Q57XL2)
PDBExternal DatabaseDetails
Phe 69Tyr 69conflict
Asn 97Ser 97conflict
Ser 138Pro 138conflict
Ala 173Thr 173conflict
Ala 206Thr 206conflict
DN: 1 - 293 (UniProt: Q38D60)
PDBExternal DatabaseDetails
Gly 51Ser 51conflict
DP: 1 - 274 (UniProt: Q38F25)
PDBExternal DatabaseDetails
His 3Arg 3conflict
DR: 1 - 270 (UniProt: Q57UA2)
PDBExternal DatabaseDetails
Gly 65Ser 65conflict
Gly 94Glu 94conflict
Pro 128Ser 128conflict
Arg 229Gln 229conflict
DU: 1 - 228 (UniProt: Q582T9)
PDBExternal DatabaseDetails
Ile 119Leu 119conflict
Ile 152Val 152conflict
CE: 1 - 435 (UniProt: Q38AX6)
PDBExternal DatabaseDetails
Arg 341Lys 341conflict
CH: 1 - 282 (UniProt: Q388R7)
PDBExternal DatabaseDetails
Asn 74Ser 74conflict
CI: 1 - 443 (UniProt: Q57W62)
PDBExternal DatabaseDetails
Ala 370Val 370conflict
CK: 1 - 326 (UniProt: Q389T7)
PDBExternal DatabaseDetails
Arg 3Gln 3conflict
Unk 138Ile 138conflict
CQ: 1 - 307 (UniProt: Q38DP8)
PDBExternal DatabaseDetails
Ala 138Val 138conflict
CR: 1 - 320 (UniProt: Q38AS2)
PDBExternal DatabaseDetails
Ile 8Val 8conflict
CZ: 1 - 360 (UniProt: Q57WU2)
PDBExternal DatabaseDetails
Ser 6Gly 6conflict
Thr 30Ile 30conflict
Thr 172Ala 172conflict
Cb: 1 - 311 (UniProt: Q57VB2)
PDBExternal DatabaseDetails
Ser 244Asn 244conflict
-Glu 246deletion
Cys 312-expression tag
Ser 313-expression tag
Arg 314-expression tag
Asp 315-expression tag
Gly 316-expression tag
Phe 317-expression tag
Ala 318-expression tag
Leu 319-expression tag
Met 320-expression tag
Lys 321-expression tag
Ala 322-expression tag
Asn 323-expression tag
Lys 324-expression tag
Cq: 1 - 263 (UniProt: Q586A1)
PDBExternal DatabaseDetails
Thr 48Ala 48conflict
Met 167Val 167conflict
Cr: 1 - 439 (UniProt: Q585I1)
PDBExternal DatabaseDetails
Lys 351Glu 351conflict
Cv: 1 - 1211 (UniProt: Q383R4)
PDBExternal DatabaseDetails
Cys 16Pro 16conflict
Thr 718Ala 718conflict
Glu 1179Gly 1179conflict
CA: 1 - 613 (GenBank: 343546)
PDBExternal DatabaseDetails
U 298C 2839conflict
U 614-insertion
U 615-insertion
U 616-insertion
U 617-insertion
U 618-insertion
U 619-insertion
U 620-insertion
U 621-insertion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains41
Total formula weight1750274.8
Non-Polymers*Number of molecules43
Total formula weight1629.4
All*Total formula weight1751904.3
*Water molecules are not included.

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PDB entries from 2024-09-04

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