6HIY
Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the body of the small mitoribosomal subunit in complex with mt-IF-3
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | DA | mS48 | polymer | 1788 | 201811.2 | 1 | UniProt (Q57UJ2) In PDB | Trypanosoma brucei brucei | |
2 | DD | mS51 | polymer | 812 | 95081.0 | 1 | UniProt (Q385L8) In PDB | Trypanosoma brucei brucei | |
3 | DI | mS56 | polymer | 407 | 47306.8 | 1 | UniProt (Q587C2) In PDB | Trypanosoma brucei brucei | |
4 | DL | mS59 | polymer | 307 | 35395.7 | 1 | UniProt (Q38BS2) In PDB | Trypanosoma brucei brucei | |
5 | DM | mS60 | polymer | 294 | 34546.6 | 1 | UniProt (Q57XL2) In PDB | Trypanosoma brucei brucei | |
6 | DN | mS61 | polymer | 293 | 33482.3 | 1 | UniProt (Q38D60) In PDB | Trypanosoma brucei brucei | |
7 | DO | mS62 | polymer | 282 | 32068.1 | 1 | UniProt (Q383D1) In PDB | Trypanosoma brucei brucei | |
8 | DP | mS63 | polymer | 274 | 31922.2 | 1 | UniProt (Q38F25) In PDB | Trypanosoma brucei brucei | |
9 | DQ | mS64 | polymer | 268 | 30742.2 | 1 | UniProt (Q382E8) Pfam (PF10469) In PDB | Trypanosoma brucei brucei | |
10 | DR | mS65 | polymer | 270 | 30617.4 | 1 | UniProt (Q57UA2) In PDB | Trypanosoma brucei brucei | |
11 | DS | mS66 | polymer | 261 | 29960.2 | 1 | UniProt (Q388L7) Pfam (PF14311) In PDB | Trypanosoma brucei brucei | |
12 | DU | mS68 | polymer | 228 | 26472.8 | 1 | UniProt (Q582T9) Pfam (PF00240) In PDB | Trypanosoma brucei brucei | |
13 | DZ | mS73 | polymer | 94 | 11360.9 | 1 | UniProt (Q587C4) In PDB | Trypanosoma brucei brucei | |
14 | Da | mS74 | polymer | 64 | 8203.4 | 1 | Trypanosoma brucei brucei | ||
15 | CE | mS55m | polymer | 435 | 50147.4 | 1 | UniProt (Q38AX6) Pfam (PF03719) In PDB | Trypanosoma brucei brucei | |
16 | CF | bS6m | polymer | 160 | 18861.5 | 1 | UniProt (Q38BW5) In PDB | Trypanosoma brucei brucei | |
17 | CH | uS8m | polymer | 282 | 32766.5 | 1 | UniProt (Q388R7) Pfam (PF00410) In PDB | Trypanosoma brucei brucei | |
18 | CI | uS9m | polymer | 443 | 50201.0 | 1 | UniProt (Q57W62) Pfam (PF00380) In PDB | Trypanosoma brucei brucei | |
19 | CK | uS11m | polymer | 326 | 37925.9 | 1 | UniProt (Q389T7) In PDB | Trypanosoma brucei brucei | |
20 | CL | uS12m | polymer | 87 | 10421.6 | 1 | Trypanosoma brucei brucei | ||
21 | CO | uS15m | polymer | 429 | 50401.2 | 1 | UniProt (Q4GZ99) In PDB | Trypanosoma brucei brucei | |
22 | CP | bS16m | polymer | 188 | 22077.8 | 1 | UniProt (Q384N9) In PDB | Trypanosoma brucei brucei | |
23 | CQ | uS17m | polymer | 307 | 35632.7 | 1 | UniProt (Q38DP8) Pfam (PF00366) In PDB | Trypanosoma brucei brucei | |
24 | CR | bS18m | polymer | 320 | 36988.7 | 1 | UniProt (Q38AS2) In PDB | Trypanosoma brucei brucei | |
25 | CU | uS21m | polymer | 193 | 23087.9 | 1 | UniProt (Q580M9) In PDB | Trypanosoma brucei brucei | |
26 | CZ | mt-IF-3 | polymer | 360 | 41086.3 | 1 | UniProt (Q57WU2) In PDB | Trypanosoma brucei brucei | |
27 | Ca | mS22 | polymer | 602 | 73064.1 | 1 | UniProt (Q38DR3) In PDB | Trypanosoma brucei brucei | |
28 | Cb | mS23 | polymer | 324 | 36784.5 | 1 | UniProt (Q57VB2) In PDB | Trypanosoma brucei brucei | |
29 | Cd | mS26 | polymer | 440 | 51136.7 | 1 | UniProt (Q38DK6) In PDB | Trypanosoma brucei brucei | |
30 | Cj | mS34 | polymer | 257 | 28728.2 | 1 | UniProt (Q57UK0) In PDB | Trypanosoma brucei brucei | |
31 | Cm | mS37 | polymer | 215 | 24757.9 | 1 | UniProt (Q38C96) In PDB | Trypanosoma brucei brucei | |
32 | Cn | mS38 | polymer | 250 | 28240.6 | 1 | UniProt (Q57VQ9) In PDB | Trypanosoma brucei brucei | |
33 | Cp | mS41 | polymer | 187 | 22421.5 | 1 | UniProt (Q389L3) In PDB | Trypanosoma brucei brucei | |
34 | Cq | mS42 | polymer | 263 | 29748.7 | 1 | UniProt (Q586A1) Pfam (PF02777) In PDB | Trypanosoma brucei brucei | |
35 | Cr | mS43 | polymer | 439 | 48590.4 | 1 | UniProt (Q585I1) Pfam (PF02777) In PDB | Trypanosoma brucei brucei | |
36 | Cv | mS47 | polymer | 1211 | 137935.0 | 1 | UniProt (Q383R4) Pfam (PF16113) In PDB | Trypanosoma brucei brucei | |
37 | CA | 9S rRNA | polymer | 621 | 198481.4 | 1 | GenBank (343546) | Trypanosoma brucei brucei | |
38 | UQ | Unknown protein | polymer | 32 | 2741.4 | 1 | Trypanosoma brucei brucei | ||
39 | UR | Unknown protein | polymer | 8 | 698.9 | 1 | Trypanosoma brucei brucei | ||
40 | US | Unknown protein | polymer | 54 | 4613.7 | 1 | Trypanosoma brucei brucei | ||
41 | UT | Unknown protein | polymer | 44 | 3762.6 | 1 | Trypanosoma brucei brucei | ||
42 | DA, DS, Cr | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
43 | CA, CO, CQ, Ca, Cv | MAGNESIUM ION | non-polymer | 24.3 | 36 | Chemie (MG) | |||
44 | CA | SPERMIDINE | non-polymer | 145.2 | 2 | Chemie (SPD) | |||
45 | CA | SPERMINE | non-polymer | 202.3 | 1 | Chemie (SPM) |
Sequence modifications
DA: 1 - 1788 (UniProt: Q57UJ2)
DD: 1 - 812 (UniProt: Q385L8)
DI: 1 - 407 (UniProt: Q587C2)
DL: 1 - 307 (UniProt: Q38BS2)
DM: 1 - 294 (UniProt: Q57XL2)
DN: 1 - 293 (UniProt: Q38D60)
DP: 1 - 274 (UniProt: Q38F25)
DR: 1 - 270 (UniProt: Q57UA2)
DU: 1 - 228 (UniProt: Q582T9)
CE: 1 - 435 (UniProt: Q38AX6)
CH: 1 - 282 (UniProt: Q388R7)
CI: 1 - 443 (UniProt: Q57W62)
CK: 1 - 326 (UniProt: Q389T7)
CQ: 1 - 307 (UniProt: Q38DP8)
CR: 1 - 320 (UniProt: Q38AS2)
CZ: 1 - 360 (UniProt: Q57WU2)
Cb: 1 - 311 (UniProt: Q57VB2)
Cq: 1 - 263 (UniProt: Q586A1)
Cr: 1 - 439 (UniProt: Q585I1)
Cv: 1 - 1211 (UniProt: Q383R4)
CA: 1 - 613 (GenBank: 343546)
PDB | External Database | Details |
---|---|---|
His 894 | Asn 894 | conflict |
Thr 1181 | Ile 1181 | conflict |
Ala 1333 | Val 1333 | conflict |
Arg 1700 | His 1700 | conflict |
Lys 1761 | Arg 1761 | conflict |
PDB | External Database | Details |
---|---|---|
Pro 371 | Ser 371 | conflict |
Ala 599 | Val 599 | conflict |
PDB | External Database | Details |
---|---|---|
Glu 92 | Gly 92 | conflict |
Asp 116 | Glu 116 | conflict |
PDB | External Database | Details |
---|---|---|
Thr 274 | Ala 274 | conflict |
PDB | External Database | Details |
---|---|---|
Phe 69 | Tyr 69 | conflict |
Asn 97 | Ser 97 | conflict |
Ser 138 | Pro 138 | conflict |
Ala 173 | Thr 173 | conflict |
Ala 206 | Thr 206 | conflict |
PDB | External Database | Details |
---|---|---|
Gly 51 | Ser 51 | conflict |
PDB | External Database | Details |
---|---|---|
His 3 | Arg 3 | conflict |
PDB | External Database | Details |
---|---|---|
Gly 65 | Ser 65 | conflict |
Gly 94 | Glu 94 | conflict |
Pro 128 | Ser 128 | conflict |
Arg 229 | Gln 229 | conflict |
PDB | External Database | Details |
---|---|---|
Ile 119 | Leu 119 | conflict |
Ile 152 | Val 152 | conflict |
PDB | External Database | Details |
---|---|---|
Arg 341 | Lys 341 | conflict |
PDB | External Database | Details |
---|---|---|
Asn 74 | Ser 74 | conflict |
PDB | External Database | Details |
---|---|---|
Ala 370 | Val 370 | conflict |
PDB | External Database | Details |
---|---|---|
Arg 3 | Gln 3 | conflict |
Unk 138 | Ile 138 | conflict |
PDB | External Database | Details |
---|---|---|
Ala 138 | Val 138 | conflict |
PDB | External Database | Details |
---|---|---|
Ile 8 | Val 8 | conflict |
PDB | External Database | Details |
---|---|---|
Ser 6 | Gly 6 | conflict |
Thr 30 | Ile 30 | conflict |
Thr 172 | Ala 172 | conflict |
PDB | External Database | Details |
---|---|---|
Ser 244 | Asn 244 | conflict |
- | Glu 246 | deletion |
Cys 312 | - | expression tag |
Ser 313 | - | expression tag |
Arg 314 | - | expression tag |
Asp 315 | - | expression tag |
Gly 316 | - | expression tag |
Phe 317 | - | expression tag |
Ala 318 | - | expression tag |
Leu 319 | - | expression tag |
Met 320 | - | expression tag |
Lys 321 | - | expression tag |
Ala 322 | - | expression tag |
Asn 323 | - | expression tag |
Lys 324 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Thr 48 | Ala 48 | conflict |
Met 167 | Val 167 | conflict |
PDB | External Database | Details |
---|---|---|
Lys 351 | Glu 351 | conflict |
PDB | External Database | Details |
---|---|---|
Cys 16 | Pro 16 | conflict |
Thr 718 | Ala 718 | conflict |
Glu 1179 | Gly 1179 | conflict |
PDB | External Database | Details |
---|---|---|
U 298 | C 2839 | conflict |
U 614 | - | insertion |
U 615 | - | insertion |
U 616 | - | insertion |
U 617 | - | insertion |
U 618 | - | insertion |
U 619 | - | insertion |
U 620 | - | insertion |
U 621 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 41 |
Total formula weight | 1750274.8 | |
Non-Polymers* | Number of molecules | 43 |
Total formula weight | 1629.4 | |
All* | Total formula weight | 1751904.3 |