6HCF
Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A1 | 18S ribosomal RNA | polymer | 1869 | 602778.9 | 1 | Oryctolagus cuniculus | ||
| 2 | B1 | uS2 | polymer | 295 | 32958.0 | 1 | Oryctolagus cuniculus | ||
| 3 | C1 | 40S ribosomal protein S3a | polymer | 264 | 30002.1 | 1 | UniProt (G1SS70) Pfam (PF01015) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 4 | D1 | uS5 | polymer | 293 | 31327.4 | 1 | Oryctolagus cuniculus | ||
| 5 | E1 | uS3 | polymer | 243 | 26715.3 | 1 | UniProt (G1TNM3) Pfam (PF07650) Pfam (PF00189) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 6 | F1 | eS4 | polymer | 263 | 29654.9 | 1 | Oryctolagus cuniculus | ||
| 7 | G1 | Ribosomal protein S5 | polymer | 204 | 22913.5 | 1 | UniProt (G1TFM5) Pfam (PF00177) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 8 | H1 | 40S ribosomal protein S6 | polymer | 249 | 28751.9 | 1 | UniProt (G1TM55) Pfam (PF01092) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 9 | I1 | 40S ribosomal protein S7 | polymer | 194 | 22168.9 | 1 | UniProt (G1SVB0) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 10 | J1 | eS8 | polymer | 208 | 24263.4 | 1 | Oryctolagus cuniculus | ||
| 11 | K1 | Ribosomal protein S9 (Predicted) | polymer | 194 | 22641.6 | 1 | UniProt (B7NZS8) Pfam (PF00163) Pfam (PF01479) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 12 | L1 | eS10 | polymer | 165 | 18933.8 | 1 | UniProt (G1TPV3) Pfam (PF03501) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 13 | M1 | Ribosomal protein S11 | polymer | 158 | 18468.8 | 1 | UniProt (G1TRM4) Pfam (PF16205) Pfam (PF00366) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 14 | N1 | 40S ribosomal protein S12 | polymer | 132 | 14539.0 | 1 | UniProt (G1SFR8) Pfam (PF01248) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 15 | O1 | uS15 | polymer | 151 | 17259.4 | 1 | UniProt (G1SP51) Pfam (PF08069) Pfam (PF00312) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 16 | P1 | uS11 | polymer | 168 | 18134.0 | 1 | Oryctolagus cuniculus | ||
| 17 | Q1 | uS19 | polymer | 145 | 17049.2 | 1 | UniProt (G1U0Q2) Pfam (PF00203) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 18 | R1 | Ribosomal protein S16 | polymer | 146 | 16477.4 | 1 | UniProt (G1SGX4) Pfam (PF00380) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 19 | S1 | eS17 | polymer | 135 | 15552.1 | 1 | UniProt (G1TU13) Pfam (PF00833) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 20 | T1 | uS13 | polymer | 152 | 17759.8 | 1 | UniProt (G1TPG3) Pfam (PF00416) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 21 | U1 | eS19 | polymer | 145 | 16106.6 | 1 | Oryctolagus cuniculus | ||
| 22 | V1 | uS10 | polymer | 119 | 13398.8 | 1 | UniProt (G1SIZ2) Pfam (PF00338) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 23 | W1 | eS21 | polymer | 83 | 9124.4 | 1 | Oryctolagus cuniculus | ||
| 24 | X1 | Ribosomal protein S15a | polymer | 130 | 14865.6 | 1 | UniProt (G1TG89) Pfam (PF00410) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 25 | Y1 | uS12 | polymer | 143 | 15844.7 | 1 | Oryctolagus cuniculus | ||
| 26 | Z1 | eS24 | polymer | 130 | 15107.9 | 1 | Oryctolagus cuniculus | ||
| 27 | a1 | eS25 | polymer | 125 | 13776.2 | 1 | UniProt (G1TDB3) Pfam (PF03297) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 28 | b1 | eS26 | polymer | 115 | 13047.5 | 1 | Oryctolagus cuniculus | ||
| 29 | c1 | 40S ribosomal protein S27 | polymer | 84 | 9480.2 | 1 | UniProt (G1TZ76) Pfam (PF01667) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 30 | d1 | Ribosomal protein S28 | polymer | 69 | 7855.1 | 1 | UniProt (G1TIB4) Pfam (PF01200) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 31 | e1 | uS14 | polymer | 56 | 6690.8 | 1 | UniProt (G1U7M4) Pfam (PF00253) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 32 | f1 | 40S ribosomal protein S30 | polymer | 133 | 14498.9 | 1 | UniProt (G1T8A2) Pfam (PF00240) Pfam (PF04758) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 33 | g1 | Ribosomal protein S27a | polymer | 156 | 18004.0 | 1 | UniProt (G1SK22) Pfam (PF00240) Pfam (PF01599) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 34 | h1 | RACK1 | polymer | 317 | 35115.7 | 1 | UniProt (G1SJB4) Pfam (PF00400) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 35 | j1 | eRF1(AAQ) | polymer | 439 | 49264.9 | 1 | Homo sapiens | ||
| 36 | k1 | ATP binding cassette subfamily E member 1 | polymer | 599 | 67405.2 | 1 | UniProt (G1SG72) Pfam (PF04068) Pfam (PF00037) Pfam (PF00005) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 37 | 52 | 28S ribosomal RNA | polymer | 3634 | 1177577.0 | 1 | Oryctolagus cuniculus | ||
| 38 | 72 | 5S ribosomal RNA | polymer | 120 | 38691.9 | 1 | Oryctolagus cuniculus | ||
| 39 | 82 | 5.8S ribosomal RNA | polymer | 156 | 50143.6 | 1 | Oryctolagus cuniculus | ||
| 40 | A3 | Ribosomal protein L8 | polymer | 257 | 28088.9 | 1 | UniProt (G1TT27) Pfam (PF00181) Pfam (PF03947) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 41 | B3 | uL3 | polymer | 403 | 46108.0 | 1 | UniProt (G1TL06) Pfam (PF00297) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 42 | C3 | uL4 | polymer | 425 | 47727.6 | 1 | Oryctolagus cuniculus | ||
| 43 | E3 | 60S ribosomal protein L6 | polymer | 291 | 33028.3 | 1 | UniProt (G1SKF7) Pfam (PF03868) Pfam (PF01159) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 44 | F3 | uL30 | polymer | 247 | 29201.8 | 1 | UniProt (G1TUB1) Pfam (PF08079) Pfam (PF00327) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 45 | H3 | uL6 | polymer | 192 | 21871.4 | 1 | UniProt (G1TX33) UniProt (by SIFTS) (G1SWI6) Pfam (PF00347) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 46 | L3 | eL13 | polymer | 211 | 24331.7 | 1 | Oryctolagus cuniculus | ||
| 47 | M3 | Ribosomal protein L14 | polymer | 218 | 23870.5 | 1 | UniProt (G1SZ12) Pfam (PF01929) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 48 | N3 | Ribosomal protein L15 | polymer | 204 | 24207.3 | 1 | UniProt (G1T0C1) Pfam (PF00827) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 49 | O3 | uL13 | polymer | 203 | 23533.3 | 1 | Oryctolagus cuniculus | ||
| 50 | P3 | uL22 | polymer | 184 | 21444.2 | 1 | UniProt (G1TVT6) UniProt (by SIFTS) (G1SCJ6) Pfam (PF00237) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 51 | Q3 | eL18 | polymer | 188 | 21699.7 | 1 | Oryctolagus cuniculus | ||
| 52 | R3 | eL19 | polymer | 196 | 23535.3 | 1 | Oryctolagus cuniculus | ||
| 53 | S3 | eL20 | polymer | 176 | 20827.6 | 1 | Oryctolagus cuniculus | ||
| 54 | T3 | eL21 | polymer | 160 | 18610.0 | 1 | UniProt (G1SHQ2) Pfam (PF01157) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 55 | U3 | eL22 | polymer | 128 | 14813.0 | 1 | Oryctolagus cuniculus | ||
| 56 | V3 | Ribosomal protein L23 | polymer | 140 | 14892.5 | 1 | UniProt (G1T6D1) Pfam (PF00238) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 57 | W3 | eL24 | polymer | 157 | 17825.1 | 1 | UniProt (G1SE28) Pfam (PF01246) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 58 | X3 | uL23 | polymer | 156 | 17768.2 | 1 | UniProt (G1SE76) Pfam (PF03939) Pfam (PF00276) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 59 | Y3 | Ribosomal protein L26 | polymer | 145 | 17303.4 | 1 | UniProt (G1SQH0) Pfam (PF16906) Pfam (PF00467) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 60 | Z3 | 60S ribosomal protein L27 | polymer | 136 | 15835.8 | 1 | UniProt (G1TXF6) Pfam (PF00467) Pfam (PF01777) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 61 | a3 | uL15 | polymer | 148 | 16620.6 | 1 | Oryctolagus cuniculus | ||
| 62 | b3 | eL29 | polymer | 226 | 24931.6 | 1 | UniProt (G1SGR6) Pfam (PF01779) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 63 | c3 | eL30 | polymer | 115 | 12807.1 | 1 | UniProt (G1TDL2) Pfam (PF01248) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 64 | d3 | eL31 | polymer | 125 | 14494.9 | 1 | UniProt (G1SHG0) Pfam (PF01198) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 65 | e3 | eL32 | polymer | 135 | 15898.9 | 1 | UniProt (G1U437) UniProt (by SIFTS) (G1TUN8) Pfam (PF01655) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 66 | f3 | eL33 | polymer | 110 | 12580.8 | 1 | UniProt (G1SF08) Pfam (PF01247) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 67 | g3 | eL34 | polymer | 117 | 13326.1 | 1 | Oryctolagus cuniculus | ||
| 68 | h3 | uL29 | polymer | 123 | 14566.6 | 1 | UniProt (G1SIT5) Pfam (PF00831) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 69 | i3 | 60S ribosomal protein L36 | polymer | 105 | 12263.8 | 1 | UniProt (G1TTQ5) Pfam (PF01158) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 70 | j3 | Ribosomal protein L37 | polymer | 97 | 11111.0 | 1 | UniProt (U3KPD5) Pfam (PF01907) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 71 | k3 | eL38 | polymer | 70 | 8238.9 | 1 | Oryctolagus cuniculus | ||
| 72 | l3 | eL39 | polymer | 51 | 6455.8 | 1 | UniProt (G1TTN1) Pfam (PF00832) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 73 | m3 | eL40 | polymer | 102 | 11699.8 | 1 | Oryctolagus cuniculus | ||
| 74 | n3 | eL41 | polymer | 25 | 3473.5 | 1 | Oryctolagus cuniculus | ||
| 75 | o3 | eL42 | polymer | 106 | 12477.0 | 1 | Oryctolagus cuniculus | ||
| 76 | p3 | eL43 | polymer | 92 | 10299.4 | 1 | UniProt (G1SY53) Pfam (PF01780) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 77 | r3 | eL28 | polymer | 137 | 15783.6 | 1 | UniProt (G1U7L1) Pfam (PF01778) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 78 | s3 | uL10 | polymer | 318 | 34380.5 | 1 | Oryctolagus cuniculus | ||
| 79 | t3 | Ribosomal protein L12 | polymer | 165 | 17847.6 | 1 | UniProt (G1SMR7) Pfam (PF03946) Pfam (PF00298) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 80 | 23 | P-site tRNA | polymer | 76 | 24436.6 | 1 | Oryctolagus cuniculus | ||
| 81 | w3 | mRNA | polymer | 23 | 7387.5 | 1 | Oryctolagus cuniculus | ||
| 82 | J3 | Ribosomal protein L11 | polymer | 178 | 20288.5 | 1 | UniProt (G1TUB8) Pfam (PF00281) Pfam (PF00673) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 83 | G3 | eL8 | polymer | 319 | 36221.5 | 1 | Oryctolagus cuniculus | ||
| 84 | D3 | 60S ribosomal protein L5 | polymer | 297 | 34481.8 | 1 | UniProt (G1SYJ6) UniProt (by SIFTS) (P19949) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 85 | I3 | 60S ribosomal protein L10 | polymer | 214 | 24643.1 | 1 | UniProt (B7NZQ2) Pfam (PF00252) In PDB | Oryctolagus cuniculus (Rabbit) | Ribosomal protein L10 (Predicted) |
| 86 | 1 | nascent chain | polymer | 22 | 1581.7 | 1 | Oryctolagus cuniculus | ||
| 87 | u3 | uL1 | polymer | 217 | 24879.4 | 1 | UniProt (G1SKZ8) Pfam (PF00687) In PDB | Oryctolagus cuniculus (Rabbit) | |
| 88 | A1, 52, g3, w3, G1... | MAGNESIUM ION | non-polymer | 24.3 | 300 | Chemie (MG) | |||
| 89 | g3, j3, m3, o3, p3... | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) | |||
| 90 | k1 | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 2 | Chemie (SF4) | |||
| 91 | water | water | 18.0 | 4 | Chemie (HOH) |
Sequence modifications
B3: 2 - 403 (UniProt: G1TL06)
F3: 1 - 247 (UniProt: G1TUB1)
D3: 2 - 297 (UniProt: G1SYJ6)
| PDB | External Database | Details |
|---|---|---|
| Met 1 | - | initiating methionine |
| PDB | External Database | Details |
|---|---|---|
| Arg 61 | Gly 61 | conflict |
| Arg 93 | Gly 93 | conflict |
| Met 131 | Val 131 | conflict |
| Ile 153 | Val 153 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Met 1 | - | initiating methionine |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 87 |
| Total formula weight | 3564049.5 | |
| Non-Polymers* | Number of molecules | 310 |
| Total formula weight | 8518.1 | |
| All* | Total formula weight | 3572567.6 |
