Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6HCF

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A118S ribosomal RNApolymer1869602778.91Oryctolagus cuniculus
2B1uS2polymer29532958.01Oryctolagus cuniculus
3C140S ribosomal protein S3apolymer26430002.11UniProt (G1SS70)
Pfam (PF01015)
In PDB
Oryctolagus cuniculus (Rabbit)
4D1uS5polymer29331327.41Oryctolagus cuniculus
5E1uS3polymer24326715.31UniProt (G1TNM3)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Oryctolagus cuniculus (Rabbit)
6F1eS4polymer26329654.91Oryctolagus cuniculus
7G1Ribosomal protein S5polymer20422913.51UniProt (G1TFM5)
Pfam (PF00177)
In PDB
Oryctolagus cuniculus (Rabbit)
8H140S ribosomal protein S6polymer24928751.91UniProt (G1TM55)
Pfam (PF01092)
In PDB
Oryctolagus cuniculus (Rabbit)
9I140S ribosomal protein S7polymer19422168.91UniProt (G1SVB0)
In PDB
Oryctolagus cuniculus (Rabbit)
10J1eS8polymer20824263.41Oryctolagus cuniculus
11K1Ribosomal protein S9 (Predicted)polymer19422641.61UniProt (B7NZS8)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Oryctolagus cuniculus (Rabbit)
12L1eS10polymer16518933.81UniProt (G1TPV3)
Pfam (PF03501)
In PDB
Oryctolagus cuniculus (Rabbit)
13M1Ribosomal protein S11polymer15818468.81UniProt (G1TRM4)
Pfam (PF16205)
Pfam (PF00366)
In PDB
Oryctolagus cuniculus (Rabbit)
14N140S ribosomal protein S12polymer13214539.01UniProt (G1SFR8)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (Rabbit)
15O1uS15polymer15117259.41UniProt (G1SP51)
Pfam (PF08069)
Pfam (PF00312)
In PDB
Oryctolagus cuniculus (Rabbit)
16P1uS11polymer16818134.01Oryctolagus cuniculus
17Q1uS19polymer14517049.21UniProt (G1U0Q2)
Pfam (PF00203)
In PDB
Oryctolagus cuniculus (Rabbit)
18R1Ribosomal protein S16polymer14616477.41UniProt (G1SGX4)
Pfam (PF00380)
In PDB
Oryctolagus cuniculus (Rabbit)
19S1eS17polymer13515552.11UniProt (G1TU13)
Pfam (PF00833)
In PDB
Oryctolagus cuniculus (Rabbit)
20T1uS13polymer15217759.81UniProt (G1TPG3)
Pfam (PF00416)
In PDB
Oryctolagus cuniculus (Rabbit)
21U1eS19polymer14516106.61Oryctolagus cuniculus
22V1uS10polymer11913398.81UniProt (G1SIZ2)
Pfam (PF00338)
In PDB
Oryctolagus cuniculus (Rabbit)
23W1eS21polymer839124.41Oryctolagus cuniculus
24X1Ribosomal protein S15apolymer13014865.61UniProt (G1TG89)
Pfam (PF00410)
In PDB
Oryctolagus cuniculus (Rabbit)
25Y1uS12polymer14315844.71Oryctolagus cuniculus
26Z1eS24polymer13015107.91Oryctolagus cuniculus
27a1eS25polymer12513776.21UniProt (G1TDB3)
Pfam (PF03297)
In PDB
Oryctolagus cuniculus (Rabbit)
28b1eS26polymer11513047.51Oryctolagus cuniculus
29c140S ribosomal protein S27polymer849480.21UniProt (G1TZ76)
Pfam (PF01667)
In PDB
Oryctolagus cuniculus (Rabbit)
30d1Ribosomal protein S28polymer697855.11UniProt (G1TIB4)
Pfam (PF01200)
In PDB
Oryctolagus cuniculus (Rabbit)
31e1uS14polymer566690.81UniProt (G1U7M4)
Pfam (PF00253)
In PDB
Oryctolagus cuniculus (Rabbit)
32f140S ribosomal protein S30polymer13314498.91UniProt (G1T8A2)
Pfam (PF00240)
Pfam (PF04758)
In PDB
Oryctolagus cuniculus (Rabbit)
33g1Ribosomal protein S27apolymer15618004.01UniProt (G1SK22)
Pfam (PF00240)
Pfam (PF01599)
In PDB
Oryctolagus cuniculus (Rabbit)
34h1RACK1polymer31735115.71UniProt (G1SJB4)
Pfam (PF00400)
In PDB
Oryctolagus cuniculus (Rabbit)
35j1eRF1(AAQ)polymer43949264.91Homo sapiens
36k1ATP binding cassette subfamily E member 1polymer59967405.21UniProt (G1SG72)
Pfam (PF04068)
Pfam (PF00037)
Pfam (PF00005)
In PDB
Oryctolagus cuniculus (Rabbit)
375228S ribosomal RNApolymer36341177577.01Oryctolagus cuniculus
38725S ribosomal RNApolymer12038691.91Oryctolagus cuniculus
39825.8S ribosomal RNApolymer15650143.61Oryctolagus cuniculus
40A3Ribosomal protein L8polymer25728088.91UniProt (G1TT27)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Oryctolagus cuniculus (Rabbit)
41B3uL3polymer40346108.01UniProt (G1TL06)
Pfam (PF00297)
In PDB
Oryctolagus cuniculus (Rabbit)
42C3uL4polymer42547727.61Oryctolagus cuniculus
43E360S ribosomal protein L6polymer29133028.31UniProt (G1SKF7)
Pfam (PF03868)
Pfam (PF01159)
In PDB
Oryctolagus cuniculus (Rabbit)
44F3uL30polymer24729201.81UniProt (G1TUB1)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Oryctolagus cuniculus (Rabbit)
45H3uL6polymer19221871.41UniProt (G1TX33)
UniProt (by SIFTS) (G1SWI6)
Pfam (PF00347)
In PDB
Oryctolagus cuniculus (Rabbit)
46L3eL13polymer21124331.71Oryctolagus cuniculus
47M3Ribosomal protein L14polymer21823870.51UniProt (G1SZ12)
Pfam (PF01929)
In PDB
Oryctolagus cuniculus (Rabbit)
48N3Ribosomal protein L15polymer20424207.31UniProt (G1T0C1)
Pfam (PF00827)
In PDB
Oryctolagus cuniculus (Rabbit)
49O3uL13polymer20323533.31Oryctolagus cuniculus
50P3uL22polymer18421444.21UniProt (G1TVT6)
UniProt (by SIFTS) (G1SCJ6)
Pfam (PF00237)
In PDB
Oryctolagus cuniculus (Rabbit)
51Q3eL18polymer18821699.71Oryctolagus cuniculus
52R3eL19polymer19623535.31Oryctolagus cuniculus
53S3eL20polymer17620827.61Oryctolagus cuniculus
54T3eL21polymer16018610.01UniProt (G1SHQ2)
Pfam (PF01157)
In PDB
Oryctolagus cuniculus (Rabbit)
55U3eL22polymer12814813.01Oryctolagus cuniculus
56V3Ribosomal protein L23polymer14014892.51UniProt (G1T6D1)
Pfam (PF00238)
In PDB
Oryctolagus cuniculus (Rabbit)
57W3eL24polymer15717825.11UniProt (G1SE28)
Pfam (PF01246)
In PDB
Oryctolagus cuniculus (Rabbit)
58X3uL23polymer15617768.21UniProt (G1SE76)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Oryctolagus cuniculus (Rabbit)
59Y3Ribosomal protein L26polymer14517303.41UniProt (G1SQH0)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Oryctolagus cuniculus (Rabbit)
60Z360S ribosomal protein L27polymer13615835.81UniProt (G1TXF6)
Pfam (PF00467)
Pfam (PF01777)
In PDB
Oryctolagus cuniculus (Rabbit)
61a3uL15polymer14816620.61Oryctolagus cuniculus
62b3eL29polymer22624931.61UniProt (G1SGR6)
Pfam (PF01779)
In PDB
Oryctolagus cuniculus (Rabbit)
63c3eL30polymer11512807.11UniProt (G1TDL2)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (Rabbit)
64d3eL31polymer12514494.91UniProt (G1SHG0)
Pfam (PF01198)
In PDB
Oryctolagus cuniculus (Rabbit)
65e3eL32polymer13515898.91UniProt (G1U437)
UniProt (by SIFTS) (G1TUN8)
Pfam (PF01655)
In PDB
Oryctolagus cuniculus (Rabbit)
66f3eL33polymer11012580.81UniProt (G1SF08)
Pfam (PF01247)
In PDB
Oryctolagus cuniculus (Rabbit)
67g3eL34polymer11713326.11Oryctolagus cuniculus
68h3uL29polymer12314566.61UniProt (G1SIT5)
Pfam (PF00831)
In PDB
Oryctolagus cuniculus (Rabbit)
69i360S ribosomal protein L36polymer10512263.81UniProt (G1TTQ5)
Pfam (PF01158)
In PDB
Oryctolagus cuniculus (Rabbit)
70j3Ribosomal protein L37polymer9711111.01UniProt (U3KPD5)
Pfam (PF01907)
In PDB
Oryctolagus cuniculus (Rabbit)
71k3eL38polymer708238.91Oryctolagus cuniculus
72l3eL39polymer516455.81UniProt (G1TTN1)
Pfam (PF00832)
In PDB
Oryctolagus cuniculus (Rabbit)
73m3eL40polymer10211699.81Oryctolagus cuniculus
74n3eL41polymer253473.51Oryctolagus cuniculus
75o3eL42polymer10612477.01Oryctolagus cuniculus
76p3eL43polymer9210299.41UniProt (G1SY53)
Pfam (PF01780)
In PDB
Oryctolagus cuniculus (Rabbit)
77r3eL28polymer13715783.61UniProt (G1U7L1)
Pfam (PF01778)
In PDB
Oryctolagus cuniculus (Rabbit)
78s3uL10polymer31834380.51Oryctolagus cuniculus
79t3Ribosomal protein L12polymer16517847.61UniProt (G1SMR7)
Pfam (PF03946)
Pfam (PF00298)
In PDB
Oryctolagus cuniculus (Rabbit)
8023P-site tRNApolymer7624436.61Oryctolagus cuniculus
81w3mRNApolymer237387.51Oryctolagus cuniculus
82J3Ribosomal protein L11polymer17820288.51UniProt (G1TUB8)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Oryctolagus cuniculus (Rabbit)
83G3eL8polymer31936221.51Oryctolagus cuniculus
84D360S ribosomal protein L5polymer29734481.81UniProt (G1SYJ6)
UniProt (by SIFTS) (P19949)
In PDB
Oryctolagus cuniculus (Rabbit)
85I360S ribosomal protein L10polymer21424643.11UniProt (B7NZQ2)
Pfam (PF00252)
In PDB
Oryctolagus cuniculus (Rabbit)Ribosomal protein L10 (Predicted)
861nascent chainpolymer221581.71Oryctolagus cuniculus
87u3uL1polymer21724879.41UniProt (G1SKZ8)
Pfam (PF00687)
In PDB
Oryctolagus cuniculus (Rabbit)
88A1, 52, g3, w3, G1...MAGNESIUM IONnon-polymer24.3300Chemie (MG)
89g3, j3, m3, o3, p3...ZINC IONnon-polymer65.48Chemie (ZN)
90k1IRON/SULFUR CLUSTERnon-polymer351.62Chemie (SF4)
91waterwater18.04Chemie (HOH)
Sequence modifications
B3: 2 - 403 (UniProt: G1TL06)
PDBExternal DatabaseDetails
Met 1-initiating methionine
F3: 1 - 247 (UniProt: G1TUB1)
PDBExternal DatabaseDetails
Arg 61Gly 61conflict
Arg 93Gly 93conflict
Met 131Val 131conflict
Ile 153Val 153conflict
D3: 2 - 297 (UniProt: G1SYJ6)
PDBExternal DatabaseDetails
Met 1-initiating methionine
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains87
Total formula weight3564049.5
Non-Polymers*Number of molecules310
Total formula weight8518.1
All*Total formula weight3572567.6
*Water molecules are not included.

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon