6HA1
Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | 23S ribosomal RNA | polymer | 2928 | 949646.3 | 1 | GenBank (467326) | Bacillus subtilis (strain 168) | |
| 2 | B | 5S ribosomal RNA | polymer | 112 | 36157.5 | 1 | GenBank (1150402534) | Bacillus subtilis (strain 168) | |
| 3 | C | 50S ribosomal protein L2 | polymer | 277 | 30335.1 | 1 | UniProt (P42919) Pfam (PF00181) Pfam (PF03947) In PDB | Bacillus subtilis (strain 168) | BL2 |
| 4 | D | 50S ribosomal protein L3 | polymer | 209 | 22723.3 | 1 | UniProt (P42920) Pfam (PF00297) In PDB | Bacillus subtilis (strain 168) | BL3 |
| 5 | E | 50S ribosomal protein L4 | polymer | 207 | 22425.0 | 1 | UniProt (P42921) Pfam (PF00573) In PDB | Bacillus subtilis (strain 168) | |
| 6 | F | 50S ribosomal protein L5 | polymer | 179 | 20177.6 | 1 | UniProt (P12877) Pfam (PF00281) Pfam (PF00673) In PDB | Bacillus subtilis (strain 168) | BL6 |
| 7 | G | 50S ribosomal protein L6 | polymer | 179 | 19543.4 | 1 | UniProt (P46898) Pfam (PF00347) In PDB | Bacillus subtilis (strain 168) | BL10 |
| 8 | J | 50S ribosomal protein L13 | polymer | 145 | 16407.1 | 1 | UniProt (P70974) Pfam (PF00572) In PDB | Bacillus subtilis (strain 168) | |
| 9 | K | 50S ribosomal protein L14 | polymer | 122 | 13175.3 | 1 | UniProt (P12875) Pfam (PF00238) In PDB | Bacillus subtilis (strain 168) | |
| 10 | L | 50S ribosomal protein L15 | polymer | 146 | 15410.7 | 1 | UniProt (P19946) Pfam (PF00828) In PDB | Bacillus subtilis (strain 168) | |
| 11 | M | 50S ribosomal protein L16 | polymer | 144 | 16223.0 | 1 | UniProt (P14577) Pfam (PF00252) In PDB | Bacillus subtilis (strain 168) | |
| 12 | N | 50S ribosomal protein L17 | polymer | 120 | 13774.8 | 1 | UniProt (P20277) Pfam (PF01196) In PDB | Bacillus subtilis (strain 168) | BL15,BL21 |
| 13 | O | 50S ribosomal protein L18 | polymer | 120 | 12993.8 | 1 | UniProt (P46899) Pfam (PF00861) In PDB | Bacillus subtilis (strain 168) | BL16 |
| 14 | P | 50S ribosomal protein L19 | polymer | 115 | 13416.9 | 1 | UniProt (O31742) Pfam (PF01245) In PDB | Bacillus subtilis (strain 168) | |
| 15 | Q | 50S ribosomal protein L20 | polymer | 119 | 13669.2 | 1 | UniProt (P55873) Pfam (PF00453) In PDB | Bacillus subtilis (strain 168) | |
| 16 | R | 50S ribosomal protein L21 | polymer | 102 | 11296.1 | 1 | UniProt (P26908) Pfam (PF00829) In PDB | Bacillus subtilis (strain 168) | BL20 |
| 17 | S | 50S ribosomal protein L22 | polymer | 113 | 12481.6 | 1 | UniProt (P42060) Pfam (PF00237) In PDB | Bacillus subtilis (strain 168) | |
| 18 | T | 50S ribosomal protein L23 | polymer | 95 | 10978.8 | 1 | UniProt (P42924) Pfam (PF00276) In PDB | Bacillus subtilis (strain 168) | |
| 19 | U | 50S ribosomal protein L24 | polymer | 103 | 11166.1 | 1 | UniProt (P0CI78) Pfam (PF00467) Pfam (PF17136) In PDB | Bacillus subtilis (strain 168) | 12 kDa DNA-binding protein,BL23,HPB12 |
| 20 | W | 50S ribosomal protein L27 | polymer | 94 | 10391.9 | 1 | UniProt (P05657) Pfam (PF01016) In PDB | Bacillus subtilis (strain 168) | BL24,BL30 |
| 21 | X | 50S ribosomal protein L28 | polymer | 62 | 6826.1 | 1 | UniProt (P37807) Pfam (PF00830) In PDB | Bacillus subtilis (strain 168) | |
| 22 | Y | 50S ribosomal protein L29 | polymer | 66 | 7728.0 | 1 | UniProt (P12873) Pfam (PF00831) In PDB | Bacillus subtilis (strain 168) | |
| 23 | Z | 50S ribosomal protein L30 | polymer | 59 | 6650.8 | 1 | UniProt (P19947) Pfam (PF00327) In PDB | Bacillus subtilis (strain 168) | BL27 |
| 24 | 0 | 50S ribosomal protein L32 | polymer | 59 | 6745.1 | 1 | UniProt (O34687) Pfam (PF01783) In PDB | Bacillus subtilis (strain 168) | |
| 25 | 1 | 50S ribosomal protein L33 1 | polymer | 49 | 5915.9 | 1 | UniProt (P56849) Pfam (PF00471) In PDB | Bacillus subtilis (strain 168) | |
| 26 | 2 | 50S ribosomal protein L34 | polymer | 44 | 5271.3 | 1 | UniProt (P05647) Pfam (PF00468) In PDB | Bacillus subtilis (strain 168) | |
| 27 | 3 | 50S ribosomal protein L35 | polymer | 66 | 7581.1 | 1 | UniProt (P55874) Pfam (PF01632) In PDB | Bacillus subtilis (strain 168) | |
| 28 | 4 | 50S ribosomal protein L36 | polymer | 37 | 4318.4 | 1 | UniProt (P20278) Pfam (PF00444) In PDB | Bacillus subtilis (strain 168) | BL38,Ribosomal protein B,Ribosomal protein II |
| 29 | 6 | 50S ribosomal protein L31 | polymer | 63 | 7159.2 | 1 | UniProt (Q03223) Pfam (PF01197) In PDB | Bacillus subtilis (strain 168) | |
| 30 | 7 | mRNA | polymer | 3 | 872.6 | 1 | Bacillus subtilis (strain 168) | ||
| 31 | a | 16S ribosomal RNA | polymer | 1554 | 503369.1 | 1 | GenBank (225184640) | Bacillus subtilis (strain 168) | |
| 32 | b | 30S ribosomal protein S2 | polymer | 246 | 28009.3 | 1 | UniProt (P21464) Pfam (PF00318) In PDB | Bacillus subtilis (strain 168) | BS1,Vegetative protein 209,VEG209 |
| 33 | c | 30S ribosomal protein S3 | polymer | 218 | 24364.9 | 1 | UniProt (P21465) Pfam (PF07650) Pfam (PF00189) In PDB | Bacillus subtilis (strain 168) | BS3,BS2 |
| 34 | d | 30S ribosomal protein S4 | polymer | 200 | 22874.3 | 1 | UniProt (P21466) Pfam (PF00163) Pfam (PF01479) In PDB | Bacillus subtilis (strain 168) | BS4 |
| 35 | e | 30S ribosomal protein S5 | polymer | 166 | 17650.6 | 1 | UniProt (P21467) Pfam (PF00333) Pfam (PF03719) In PDB | Bacillus subtilis (strain 168) | BS5 |
| 36 | f | 30S ribosomal protein S6 | polymer | 95 | 11140.5 | 1 | UniProt (P21468) Pfam (PF01250) In PDB | Bacillus subtilis (strain 168) | BS9 |
| 37 | g | 30S ribosomal protein S7 | polymer | 156 | 17915.9 | 1 | UniProt (P21469) Pfam (PF00177) In PDB | Bacillus subtilis (strain 168) | BS7 |
| 38 | h | 30S ribosomal protein S8 | polymer | 132 | 14901.4 | 1 | UniProt (P12879) Pfam (PF00410) In PDB | Bacillus subtilis (strain 168) | BS8 |
| 39 | i | 30S ribosomal protein S9 | polymer | 130 | 14335.5 | 1 | UniProt (P21470) Pfam (PF00380) In PDB | Bacillus subtilis (strain 168) | BS10 |
| 40 | j | 30S ribosomal protein S10 | polymer | 102 | 11687.7 | 1 | UniProt (P21471) Pfam (PF00338) In PDB | Bacillus subtilis (strain 168) | BS13 |
| 41 | k | 30S ribosomal protein S11 | polymer | 131 | 13952.0 | 1 | UniProt (P04969) Pfam (PF00411) In PDB | Bacillus subtilis (strain 168) | BS11 |
| 42 | l | 30S ribosomal protein S12 | polymer | 138 | 15248.7 | 1 | UniProt (P21472) Pfam (PF00164) In PDB | Bacillus subtilis (strain 168) | BS12 |
| 43 | m | 30S ribosomal protein S13 | polymer | 121 | 13818.1 | 1 | UniProt (P20282) Pfam (PF00416) In PDB | Bacillus subtilis (strain 168) | BS14 |
| 44 | n | 30S ribosomal protein S14 | polymer | 61 | 7263.8 | 1 | UniProt (P12878) Pfam (PF00253) In PDB | Bacillus subtilis (strain 168) | 30S ribosomal protein S14 type Z,30S ribosomal protein S14-1,BS-A |
| 45 | o | 30S ribosomal protein S15 | polymer | 89 | 10597.2 | 1 | UniProt (P21473) Pfam (PF00312) In PDB | Bacillus subtilis (strain 168) | BS18 |
| 46 | p | 30S ribosomal protein S16 | polymer | 90 | 10153.8 | 1 | UniProt (P21474) Pfam (PF00886) In PDB | Bacillus subtilis (strain 168) | BS17 |
| 47 | q | 30S ribosomal protein S17 | polymer | 87 | 10221.0 | 1 | UniProt (P12874) Pfam (PF00366) In PDB | Bacillus subtilis (strain 168) | BS16 |
| 48 | r | 30S ribosomal protein S18 | polymer | 79 | 8990.6 | 1 | UniProt (P21475) Pfam (PF01084) In PDB | Bacillus subtilis (strain 168) | BS21 |
| 49 | s | 30S ribosomal protein S19 | polymer | 92 | 10607.3 | 1 | UniProt (P21476) Pfam (PF00203) In PDB | Bacillus subtilis (strain 168) | BS19 |
| 50 | t | 30S ribosomal protein S20 | polymer | 88 | 9622.2 | 1 | UniProt (P21477) Pfam (PF01649) In PDB | Bacillus subtilis (strain 168) | BS20 |
| 51 | x | P-tRNA | polymer | 87 | 28094.6 | 1 | GenBank (1430654817) | Escherichia coli | |
| 52 | A | TELITHROMYCIN | non-polymer | 812.0 | 1 | Chemie (TEL) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 51 |
| Total formula weight | 2136280.7 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 812.0 | |
| All* | Total formula weight | 2137092.7 |
