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6H0X

Crystal Structure of KDM4D with tetrazolylhydrazide ligand AA040

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1ALysine-specific demethylase 4Dpolymer34239491.81UniProt (Q6B0I6)
Pfam (PF02375)
Pfam (PF02373)
In PDB
Homo sapiens (Human)JmjC domain-containing histone demethylation protein 3D,Jumonji domain-containing protein 2D
2AZINC IONnon-polymer65.41Chemie (ZN)
3ACHLORIDE IONnon-polymer35.51Chemie (CL)
4A1,2-ETHANEDIOLnon-polymer62.13Chemie (EDO)
5ANICKEL (II) IONnon-polymer58.71Chemie (NI)
6A[[(2~{R})-2-(5-phenylpentanoylamino)-2-(2~{H}-1,2,3,4-tetrazol-5-yl)ethanoyl]amino]azaniumnon-polymer318.41Chemie (FJB)
7waterwater18.0439Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight39491.8
Non-Polymers*Number of molecules7
Total formula weight664.1
All*Total formula weight40155.9
*Water molecules are not included.

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PDB entries from 2024-06-12

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