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6H0X

Crystal Structure of KDM4D with tetrazolylhydrazide ligand AA040

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Lysine-specific demethylase 4Dpolymer34239491.81UniProt (Q6B0I6)
Pfam (PF02375)
Pfam (PF02373)
Homo sapiens (Human)JmjC domain-containing histone demethylation protein 3D,Jumonji domain-containing protein 2D
2B
(A)
ZINC IONnon-polymer65.41Chemie (ZN)
3C
(A)
CHLORIDE IONnon-polymer35.51Chemie (CL)
4D, E, F
(A)
1,2-ETHANEDIOLnon-polymer62.13Chemie (EDO)
5G
(A)
NICKEL (II) IONnon-polymer58.71Chemie (NI)
6H
(A)
[[(2~{R})-2-(5-phenylpentanoylamino)-2-(2~{H}-1,2,3,4-tetrazol-5-yl)ethanoyl]amino]azaniumnon-polymer318.41Chemie (FJB)
7I
(A)
waterwater18.0439Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight39491.8
Non-Polymers*Number of molecules7
Total formula weight664.1
All*Total formula weight40155.9
*Water molecules are not included.

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PDB entries from 2024-11-06

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