6H0X
Crystal Structure of KDM4D with tetrazolylhydrazide ligand AA040
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | binding site for residue ZN A 401 |
Chain | Residue |
A | CYS238 |
A | HIS244 |
A | CYS310 |
A | CYS312 |
site_id | AC2 |
Number of Residues | 2 |
Details | binding site for residue CL A 402 |
Chain | Residue |
A | ASN128 |
A | LYS186 |
site_id | AC3 |
Number of Residues | 2 |
Details | binding site for residue EDO A 403 |
Chain | Residue |
A | LYS124 |
A | ASN128 |
site_id | AC4 |
Number of Residues | 3 |
Details | binding site for residue EDO A 404 |
Chain | Residue |
A | THR252 |
A | ARG263 |
A | PRO251 |
site_id | AC5 |
Number of Residues | 8 |
Details | binding site for residue EDO A 405 |
Chain | Residue |
A | TYR181 |
A | GLU194 |
A | ALA292 |
A | ASN294 |
A | THR318 |
A | FJB407 |
A | HOH649 |
A | HOH735 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue NI A 406 |
Chain | Residue |
A | HIS192 |
A | GLU194 |
A | HIS280 |
A | FJB407 |
A | HOH640 |
site_id | AC7 |
Number of Residues | 18 |
Details | binding site for residue FJB A 407 |
Chain | Residue |
A | HIS90 |
A | TYR136 |
A | TYR181 |
A | HIS192 |
A | GLU194 |
A | ASN202 |
A | LYS210 |
A | LYS245 |
A | HIS280 |
A | ARG316 |
A | EDO405 |
A | NI406 |
A | HOH620 |
A | HOH640 |
A | HOH649 |
A | HOH680 |
A | HOH687 |
A | HOH735 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 42 |
Details | Domain: {"description":"JmjN","evidences":[{"source":"PROSITE-ProRule","id":"PRU00537","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI2 |
Number of Residues | 166 |
Details | Domain: {"description":"JmjC","evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 4 |
Details | Binding site: {"evidences":[{"source":"UniProtKB","id":"B2RXH2","evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 3 |
Details | Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"26741168","evidenceCode":"ECO:0000305"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI5 |
Number of Residues | 4 |
Details | Binding site: {"evidences":[{"source":"PDB","id":"5F5A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5F5C","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI6 |
Number of Residues | 2 |
Details | Modified residue: {"description":"PolyADP-ribosyl glutamic acid","evidences":[{"source":"PubMed","id":"23102699","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |