Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6H0X

Crystal Structure of KDM4D with tetrazolylhydrazide ligand AA040

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues2
Detailsbinding site for residue CL A 402
ChainResidue
AASN128
ALYS186

site_idAC3
Number of Residues2
Detailsbinding site for residue EDO A 403
ChainResidue
ALYS124
AASN128

site_idAC4
Number of Residues3
Detailsbinding site for residue EDO A 404
ChainResidue
ATHR252
AARG263
APRO251

site_idAC5
Number of Residues8
Detailsbinding site for residue EDO A 405
ChainResidue
ATYR181
AGLU194
AALA292
AASN294
ATHR318
AFJB407
AHOH649
AHOH735

site_idAC6
Number of Residues5
Detailsbinding site for residue NI A 406
ChainResidue
AHIS192
AGLU194
AHIS280
AFJB407
AHOH640

site_idAC7
Number of Residues18
Detailsbinding site for residue FJB A 407
ChainResidue
AHIS90
ATYR136
ATYR181
AHIS192
AGLU194
AASN202
ALYS210
ALYS245
AHIS280
AARG316
AEDO405
ANI406
AHOH620
AHOH640
AHOH649
AHOH680
AHOH687
AHOH735

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues42
DetailsDomain: {"description":"JmjN","evidences":[{"source":"PROSITE-ProRule","id":"PRU00537","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues166
DetailsDomain: {"description":"JmjC","evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"B2RXH2","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"26741168","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PDB","id":"5F5A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5F5C","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsModified residue: {"description":"PolyADP-ribosyl glutamic acid","evidences":[{"source":"PubMed","id":"23102699","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

239803

PDB entries from 2025-08-06

PDB statisticsPDBj update infoContact PDBjnumon