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6GZ5

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A2)
28S ribosomal RNApolymer36121170164.91Oryctolagus cuniculus (rabbit)
2B
(Bv)
P/P-site-tRNApolymer7624437.51Oryctolagus cuniculus (rabbit)
3C
(Bx)
mRNApolymer113492.11Enterobacteria phage SP6
4D
(Bw)
E/E-site-tRNApolymer7624533.61Saccharomyces cerevisiae (baker's yeast)
5E
(B1)
18S ribosomal RNApolymer1708551108.21Oryctolagus cuniculus (rabbit)
6F
(BD)
ribosomal protein uS3polymer22024357.61Oryctolagus cuniculus (rabbit)
7G
(BF)
ribosomal protein uS7polymer19021424.81Oryctolagus cuniculus (rabbit)
8H
(BK)
ribosomal protein eS10polymer9811774.01Oryctolagus cuniculus (rabbit)
9I
(BM)
ribosomal protein eS12polymer12013393.71Oryctolagus cuniculus (rabbit)
10J
(BP)
ribosomal protein uS19polymer12014273.91Oryctolagus cuniculus (rabbit)
11K
(BQ)
ribosomal protein uS9polymer13915765.51Oryctolagus cuniculus (rabbit)
12L
(BR)
ribosomal protein eS17polymer12514447.81Oryctolagus cuniculus (rabbit)
13M
(BS)
ribosomal protein uS13polymer13916383.11Oryctolagus cuniculus (rabbit)
14N
(BT)
ribosomal protein eS19polymer14315822.21Oryctolagus cuniculus (rabbit)
15O
(BU)
ribosomal protein uS10polymer9711029.11Oryctolagus cuniculus (rabbit)
16P
(BZ)
ribosomal protein eS25polymer869801.71Oryctolagus cuniculus (rabbit)
17Q
(Bc)
ribosomal protein eS28polymer627007.11Oryctolagus cuniculus (rabbit)
18R
(Bd)
ribosomal protein uS14polymer516121.21Enterobacteria phage SP6
19S
(Bf)
ribosomal protein eS31polymer738645.31Oryctolagus cuniculus (rabbit)
20T
(Bg)
ribosomal protein RACK 1polymer31434726.21Oryctolagus cuniculus (rabbit)
21U
(BA)
ribosomal protein uS2polymer21524245.71Oryctolagus cuniculus (rabbit)
22V
(BB)
ribosomal protein eS1polymer21224660.01Oryctolagus cuniculus (rabbit)
23W
(BC)
ribosomal protein uS5polymer22224575.01Oryctolagus cuniculus (rabbit)
24X
(BE)
ribosomal protein eS4polymer25728893.01Oryctolagus cuniculus (rabbit)
25Y
(BG)
ribosomal protein eS6polymer23226913.91Oryctolagus cuniculus (rabbit)
26Z
(BH)
ribosomal protein eS7polymer18320990.51Oryctolagus cuniculus (rabbit)
27AA
(BI)
ribosomal protein eS8polymer20724132.21Oryctolagus cuniculus (rabbit)
28BA
(BJ)
ribosomal protein uS4polymer17921222.21Oryctolagus cuniculus (rabbit)
29CA
(BL)
ribosomal protein uS17polymer15317910.21Oryctolagus cuniculus (rabbit)
30DA
(BN)
ribosomal protein uS15polymer14917057.11Oryctolagus cuniculus (rabbit)
31EA
(BO)
ribosomal protein uS11polymer13614544.71Oryctolagus cuniculus (rabbit)
32FA
(BV)
ribosomal protein eS21polymer818863.11Oryctolagus cuniculus (rabbit)
33GA
(BW)
ribosomal protein uS8polymer12914734.41Oryctolagus cuniculus (rabbit)
34HA
(BX)
ribosomal protein uS12polymer14115626.41Oryctolagus cuniculus (rabbit)
35IA
(BY)
ribosomal protein eS24polymer12514489.21Oryctolagus cuniculus (rabbit)
36JA
(Ba)
ribosomal protein eS26polymer9711087.11Oryctolagus cuniculus (rabbit)
37KA
(Bb)
ribosomal protein eS27polymer809000.61Oryctolagus cuniculus (rabbit)
38LA
(Be)
ribosomal protein eS30polymer556239.41Oryctolagus cuniculus (rabbit)
39MA
(A3)
5.8S ribosomal RNApolymer15750449.81Oryctolagus cuniculus (rabbit)
40NA
(A4)
5S ribosomal RNApolymer11938385.81Oryctolagus cuniculus (rabbit)
41OA
(AA)
ribosomal protein uL2polymer25227456.21Oryctolagus cuniculus (rabbit)
42PA
(AB)
ribosomal protein uL3polymer39445222.91Oryctolagus cuniculus (rabbit)
43QA
(AC)
ribosomal protein uL4polymer36341171.51Oryctolagus cuniculus (rabbit)
44RA
(AD)
ribosomal protein uL18polymer29434091.41Oryctolagus cuniculus (rabbit)
45SA
(AE)
ribosomal protein eL6polymer19422262.41Oryctolagus cuniculus (rabbit)
46TA
(AF)
ribosomal protein uL30polymer23427733.11Oryctolagus cuniculus (rabbit)
47UA
(AG)
ribosomal protein eL8polymer23426724.61Oryctolagus cuniculus (rabbit)
48VA
(AH)
ribosomal protein uL6polymer19121770.41Oryctolagus cuniculus (rabbit)
49WA
(AI)
ribosomal protein uL16polymer20824150.51Oryctolagus cuniculus (rabbit)
50XA
(AJ)
ribosomal protein uL5polymer16919270.31Oryctolagus cuniculus (rabbit)
51YA
(AL)
ribosomal protein eL13polymer20523574.71Oryctolagus cuniculus (rabbit)
52ZA
(AM)
ribosomal protein eL14polymer13916220.31Oryctolagus cuniculus (rabbit)
53AB
(AN)
ribosomal protein eL15polymer20324076.11Oryctolagus cuniculus (rabbit)
54BB
(AO)
ribosomal protein uL13polymer19522820.41Oryctolagus cuniculus (rabbit)
55CB
(AP)
ribosomal protein uL22polymer15317757.61Oryctolagus cuniculus (rabbit)
56DB
(AQ)
ribosomal protein eL18polymer18721556.51Oryctolagus cuniculus (rabbit)
57EB
(AR)
ribosomal protein eL19polymer18121742.11Oryctolagus cuniculus (rabbit)
58FB
(AS)
ribosomal protein eL20polymer17520661.31Oryctolagus cuniculus (rabbit)
59GB
(AT)
ribosomal protein eL21polymer15718276.51Oryctolagus cuniculus (rabbit)
60HB
(AU)
ribosomal protein eL22polymer9911481.21Oryctolagus cuniculus (rabbit)
61IB
(AV)
ribosomal protein uL14polymer12913828.31Oryctolagus cuniculus (rabbit)
62JB
(AW)
ribosomal protein eL24polymer12114087.41Oryctolagus cuniculus (rabbit)
63KB
(AX)
ribosomal protein uL23polymer11713614.01Oryctolagus cuniculus (rabbit)
64LB
(AY)
ribosomal protein uL24polymer12715161.91Oryctolagus cuniculus (rabbit)
65MB
(AZ)
ribosomal protein eL27polymer13415647.61Oryctolagus cuniculus (rabbit)
66NB
(Aa)
ribosomal protein uL15polymer14716473.31Oryctolagus cuniculus (rabbit)
67OB
(Ab)
ribosomal protein eL29polymer687996.41Oryctolagus cuniculus (rabbit)
68PB
(Ac)
ribosomal protein eL30polymer10311500.61Oryctolagus cuniculus (rabbit)
69QB
(Ad)
ribosomal protein eL31polymer10612506.61Oryctolagus cuniculus (rabbit)
70RB
(Ae)
ribosomal protein eL32polymer12915179.21Oryctolagus cuniculus (rabbit)
71SB
(Af)
ribosomal protein eL33polymer10912433.51Oryctolagus cuniculus (rabbit)
72TB
(Ag)
ribosomal protein eL34polymer11412994.61Oryctolagus cuniculus (rabbit)
73UB
(Ah)
ribosomal protein uL29polymer12214462.41Oryctolagus cuniculus (rabbit)
74VB
(Ai)
ribosomal protein eL36polymer9711373.71Oryctolagus cuniculus (rabbit)
75WB
(Aj)
ribosomal protein eL37polymer849864.61Oryctolagus cuniculus (rabbit)
76XB
(Ak)
ribosomal protein eL38polymer698107.81Oryctolagus cuniculus (rabbit)
77YB
(Al)
ribosomal protein eL39polymer506295.61Oryctolagus cuniculus (rabbit)
78ZB
(Am)
ribosomal protein eL40polymer505957.21Oryctolagus cuniculus (rabbit)
79AC
(An)
ribosomal protein eL41polymer253473.51Oryctolagus cuniculus (rabbit)
80BC
(Ao)
ribosomal protein eL42polymer10512345.81Oryctolagus cuniculus (rabbit)
81CC
(Ap)
ribosomal protein eL43polymer9110168.21Oryctolagus cuniculus (rabbit)
82DC
(At)
ribosomal protein eL28polymer12213991.41Oryctolagus cuniculus (rabbit)
83EC
(Au)
ribosomal protein uL1polymer21724879.41Oryctolagus cuniculus (rabbit)
84FC
(Aq)
ribosomal protein uL11polymer15116290.81Oryctolagus cuniculus (rabbit)
85GC
(AK)
ribosomal protein uL10polymer20222217.81Oryctolagus cuniculus (rabbit)
86HC
(Ct)
eukaryotic elongation factor 2 (eEF2)polymer85395056.71Oryctolagus cuniculus (rabbit)
87AD, AE, AF, AG, AH...
(A2, B1, Ba, Bx, A3...)
MAGNESIUM IONnon-polymer24.3327Chemie (MG)
88AO, AP, BP, CO, YO
(Bd, Ao, Ap, Ba, Aj)
ZINC IONnon-polymer65.45Chemie (ZN)
89CP
(Ct)
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTERnon-polymer522.21Chemie (GNP)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains86
Total formula weight3316658.0
Non-Polymers*Number of molecules333
Total formula weight8797.0
All*Total formula weight3325454.9
*Water molecules are not included.

237992

PDB entries from 2025-06-25

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