6GTF
Transient state structure of CRISPR-Cpf1 (Cas12a) I5 conformation
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | CRISPR-associated endonuclease Cas12a | polymer | 1329 | 155639.8 | 1 | UniProt (A0Q7Q2) Pfam (PF18501) Pfam (PF21918) Pfam (PF22222) Pfam (PF18516) Pfam (PF18510) In PDB | Francisella tularensis subsp. novicida U112 | CRISPR-associated endonuclease Cpf1,FnCas12a,FnCpf1 |
2 | B | RNA (29-MER) | polymer | 43 | 13749.1 | 1 | Francisella tularensis subsp. novicida U112 | ||
3 | C | DNA (5'-D(P*AP*TP*GP*AP*CP*TP*TP*CP*TP*CP*TP*AP*AP*CP*AP*AP*GP*CP*TP*CP*G)-3') | polymer | 55 | 16898.8 | 1 | Francisella tularensis subsp. novicida U112 | ||
4 | D | DNA (5'-D(P*CP*GP*AP*GP*CP*TP*CP*GP*TP*TP*AP*GP*AP*GP*AP*A)-3') | polymer | 55 | 16992.9 | 1 | Francisella tularensis subsp. novicida U112 |
Sequence modifications
A: 1 - 1300 (UniProt: A0Q7Q2)
PDB | External Database | Details |
---|---|---|
Gln 1006 | Glu 1006 | conflict |
Gly 1301 | - | expression tag |
Ser 1302 | - | expression tag |
Glu 1303 | - | expression tag |
Phe 1304 | - | expression tag |
Glu 1305 | - | expression tag |
Leu 1306 | - | expression tag |
Glu 1307 | - | expression tag |
Asn 1308 | - | expression tag |
Leu 1309 | - | expression tag |
Tyr 1310 | - | expression tag |
Phe 1311 | - | expression tag |
Gln 1312 | - | expression tag |
Gly 1313 | - | expression tag |
Glu 1314 | - | expression tag |
Leu 1315 | - | expression tag |
Arg 1316 | - | expression tag |
Arg 1317 | - | expression tag |
Gln 1318 | - | expression tag |
Ala 1319 | - | expression tag |
Ser 1320 | - | expression tag |
Ala 1321 | - | expression tag |
Leu 1322 | - | expression tag |
Glu 1323 | - | expression tag |
His 1324 | - | expression tag |
His 1325 | - | expression tag |
His 1326 | - | expression tag |
His 1327 | - | expression tag |
His 1328 | - | expression tag |
His 1329 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 203280.7 | |
All* | Total formula weight | 203280.7 |