6GDR
DNA binding with a minimal scaffold: Structure-function analysis of Lig E DNA ligases
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (B) | DNA (5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3') | polymer | 21 | 6494.2 | 1 | Alteromonas mediterranea | ||
| 2 | B (C) | DNA | polymer | 10 | 3005.0 | 1 | Alteromonas mediterranea | ||
| 3 | C (D) | DNA (5'-D(P*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*A)-3') | polymer | 11 | 3342.2 | 1 | Alteromonas mediterranea | ||
| 4 | D (A) | DNA ligase | polymer | 297 | 33017.7 | 1 | UniProt (A0A1J0SCU0) | Alteromonas mediterranea | |
| 5 | E, F (B) | PHOSPHATE ION | non-polymer | 95.0 | 2 | Chemie (PO4) | |||
| 6 | G (D) | ADENOSINE MONOPHOSPHATE | non-polymer | 347.2 | 1 | Chemie (AMP) | |||
| 7 | H, I, J, K (B, C, D, A) | water | water | 18.0 | 69 | Chemie (HOH) |
Sequence modifications
A: 1 - 297 (UniProt: A0A1J0SCU0)
| PDB | External Database | Details |
|---|---|---|
| Gly 1 | Ala 21 | conflict |
| His 5 | Leu 25 | conflict |
| Gly 18 | Ser 38 | conflict |
| Asp 56 | Ala 76 | conflict |
| Gln 98 | His 118 | conflict |
| Asp 112 | Gly 132 | conflict |
| Val 128 | Ile 148 | conflict |
| Ile 208 | Leu 228 | conflict |
| Phe 224 | Leu 244 | conflict |
| Ala 225 | Pro 245 | conflict |
| Arg 259 | Gln 279 | conflict |
| Val 264 | Ile 284 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 45859.0 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 537.2 | |
| All* | Total formula weight | 46396.2 |
